Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1624 ATGATAATCAGAGGAAGAAGAATAATAATGGGGGGTCGACTAAACTCACACGACCAATTTAGGGACTGGAGACTTGATATTGATGACATGTCATACGAGGAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGAAAAGTTAAACTTTCAAGTTCAAATGATGCATCAAAGGATCAAGAAGGCAAAAACTGCAGTGTTTGTCAGGAGGAGTATGAACCACATGATGAGTTGGGGAAATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGATCCTAA 381 0.4016 MIIRGRRIIMGGRLNSHDQFRDWRLDIDDMSYEELLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKDQEGKNCSVCQEEYEPHDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRS* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1624 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 124 IPR013083 -
Pvu4g1624 126 SMART ring_2 78 118 IPR001841 -
Pvu4g1624 126 ProSiteProfiles Zinc finger RING-type profile. 78 119 IPR001841 -
Pvu4g1624 126 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 123 IPR045191 GO:0061630
Pvu4g1624 126 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 1 123 - -
Pvu4g1624 126 Pfam Ring finger domain 77 119 IPR001841 -
Pvu4g1624 126 SUPERFAMILY RING/U-box 77 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1624 Pvu-Chr4 43503036 43506578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1624 8 123 C3H Transcription Factor Family AT2G15530 50.000 2.48e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1624 - - pvu:PHAVU_004G153500g 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1624 4 43503036 43506578 Pvu2g3346 2 48389044 48393168 ECH
Pvu4g1624 4 43503036 43506578 Pvu4g1624 4 43503036 43506578 ECH