Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1609 ATGTCAGAATTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAGGTCCTTGGTGAAGGTACATACGGTGTCGTTTACAAAGCCATCGATACGCAGACAGGGCAGACGGTGGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTGAATTTTACGGCTCTCAGAGAAATTAAACTGCTTAAGGAGCTCAAAGATCCAAACATTATTGAGCTGATTGATGCCTTTCCCCATAAAGGGAATTTACATCTCGTGTTTGCGTTCATGGAGACAGACCTTGAAGCTGTTATACGGGATCGGAATATTGTTCTTTCACCCGGTGATATAAAATCTTACCTTCAGATGACACTTAAAGGCCTTGCTGTTTGCCACAAGAAATGGGTGTTACATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTAACGGACATCTGAAACTTGCAGATTTTGGTTTAGCTCGGGTATTTGGAAGCCCAGACCGCAGGTTCACTCATCAGGTGTTTGCAAGGTGGTATAGAGCACCTGAACTATTATTTGGTACCAAGCAATATGGTCCAGGGGTAGATGTTTGGGCTGCAGCCTGTATTTTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAAATTTTCGCAGCATTTGGAACTCCATCTCCTTCTCAGTGGCCGGATATGGTCTACCTACCTGATTATGTTGAATATCAACATGTTCTTTCTCCACCTTTGCGTTCTTTGTTTCCAATGGCAAGTGACGATGCTTTAGATTTGTTGTCAAAGATGTTTACTTATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGAGCACAGGTACTTCTCTTCTGCACCTCTGCCCACAGATCCTGTTAAACTTCCAAGACCTGCCCCTAAGAAGGAATCTAAGGCTTCAGATGTAATTACAAACGAAGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCTAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGCAATTCCTTGCAAGGAGACAAGTTTGATGACAGTGTTAGTGTCAGACAGGCAGCTGGTGATAACACAGGCAAAAATGAGCCAGTTCCAATGTCACTAGATTTTTCTCTTTTTGGATTGAAACCTCCAAATAGACCTACAATTACCAGTGCTGACAGATCACATTTAAAAAGAAAGTTAGATCTAGAATTTTAA 1233 0.4282 MSEFDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFAFMETDLEAVIRDRNIVLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGHLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQHVLSPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPVKLPRPAPKKESKASDVITNEGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVSVRQAAGDNTGKNEPVPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1609 410 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Pvu4g1609 410 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Pvu4g1609 410 MobiDBLite consensus disorder prediction 300 410 - -
Pvu4g1609 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Pvu4g1609 410 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Pvu4g1609 410 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1609 410 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Pvu4g1609 410 MobiDBLite consensus disorder prediction 351 367 - -
Pvu4g1609 410 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1609 410 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Pvu4g1609 410 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Pvu4g1609 410 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1609 410 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1609 Pvu-Chr4 43346494 43351269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1609 8 410 Core Cell Cycle Gene Families AT1G73690 75.990 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Pvu4g1609 Pkinase 9.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1609 K02202 - gmx:100814263 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1609 4 43346494 43351269 Pvu4g1609 4 43346494 43351269 ECH
Pvu2g3363 2 48507345 48511684 Pvu4g1609 4 43346494 43351269 PCT