Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1605 ATGACTCCTCGCGTCGGCGATTTCGAAAACGACAATCTGTCCTCCACCGACGACGATGACGACGACGGCTTCAAGGAAGATATGGCCGCGCTCTCCCGAGCCTGCATGATCGTTGTCCCAGGCGCCGATGATTATTCCGCAGCTGAAGACGATGTTCAGCCGATGGTCCCTCTCACTGATGACGCCGGCACTGCTATTGTTCCCGTGGCCACCGACTCCGACTCCGACGACCAGGACGACCTCGAATGTCTCAAGAGAGTGCAGAGCCTTTACCAGCCTCTGTCCGTTCTTCCGCCGCTTGAGCCGGCGGTGGCCGTGTCTGACGACGACGATGACGTGGATGACCTCGAGACCGTGCGCGCCATCATGAAAAGGTTTGGCGACTACAACGAAGGTTTGCATGAAGGTGGAATAAATAAGTTGGTTGAGGAGGATCAGATTTCCAGCCTGGGCTGTGAGGGTGACATTGCTAATGGCTCAATCCATTACGAATCAGATGGTGGTGAATTATGTCCTTTCTCTCAAGATCCTAATGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGATTTTGTTGAGAGTTCTGAACCGGATGCCTGGGAGTTGTCCAGATTGCCACAGAAGAAAATGAGCTGTCCTCCTGTTGTTCAGTGTTTTATTGATGCCATTAAGAAAAATAGGGATTTGCAGAGATTTCTTAGAGGTAAATTGATTGAGCTCGAGGCTAAAATTGAGGAAAGCAAAAAGATAAGGAATAAAATTAAAATTCTTAAGGACTTCCAGGCTTCATGCACTAGAAGAACTGGGAATATATTATCACTGAAAAAAGATCCACGTGTTCAATTAATATCTGCTAAAAGGTCTTCTGCTCGAAAGAAGTCTAAGCAGAAACATAAAAAGGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCGTGTCGCTAACTATAGGATGGTATTGGAAAGATTTCCACTTTCGTTGGATCGGAAAAAATGGTCTACGGTAGACAGGGGAAATCTTTTTAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTTTCACTTTCACTTGATAGAACAAGTTCCGAGGGCTTGCTTGGAGATGCTGATGACATGGATAATATATTTGCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGACAATTTTTGCCTAAAGTTAATTGGGATCTGATGGCTTCTATATATGTTGGTGGCCATACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGATCAACCAAGGTGCATGGACTAAGGAAGAGGACAGGTCCCTTTTACTTATTGTCCAAGATATGGGCATCAGGAACTGGTTCAATATTGCTTCATCATTGGGCACAAGCAGGACTCCATTTCAATGTTTGTCACGATTCCAAAGGAGTTTAAATCCTTCAATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTATGTTCTGCTGTGACATATTTTGGTGATGGCAATTGGCAGTGCGTGGCTTCTGTTTTAGAACGGCGAACAGGAACCCAGTGCTCAAATAGATGGAAGAAATCCCTTTGTCCTGAGAAGAAAGGGAGCTTTACACCAGAGGAAGATATACGCTTAACAGTAGCTGCCATGCTTTTTGGGCGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGAAAGAGGATTTAAGATTAGAAGCTGCAATTGGCAAGCATGGATATTGTTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACGGATTCTCAATGCCGAAAGAGATGGAAAGTGTTATACCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGGCTATTATTGGTAGTAACTTTGTTGATCGAAAATCTGAACGTCCAACCATTACACTTAATGACTTTCTACCTTTACTTGCATTAGCTCCTAAATCTGATGTTGGTGCCTCAGACATCTGCAAGAAGCGCAAGTCAAGCAATGTTCCCAAGAAAACGAGCTCTAAGAAAGGTGCAAAGAGAACAAAACGTACCAAAGAAGTACCAGATACAGAGGTATATCATGATGATGAGCTCTACCCAGTCTCTACATGCAGCAATCTTCCCAAAAAGAAGATGAGGTTCAAAAGACGTATAAAAAGTAGTCGAAATCCTCCCCAAGAATTAGTGGATATCTCTTGTAGTGACAAGGTCACTTACATTGAGGGTTCAGAAAACCAATCTACCTGTATTCCGAATTCTGAAAATCAAGATTCAGACAACATACCCCTTGCATGTTTTTTACGCAAGAAATCAAATGAGATATTATCTAGATTTAACAAAAAATTGAGTCAAACTTCCTTCTCTAGGATTACTGATGTTCCTGAGCAGGTTGAAAGTCAAAACCCGTCTGATGATCAAGGCGGCTTGCCTCATTCATGTGAAACTGTTGGAACTAAAAAATTGCTTGTGCAGCCGAATGTTACTTCTGATAGACGAGTGAGAAGTGATGATGATGACGATGACCATATGACCCTTGCATGCTTTCTAAAAAACAAGCCAAAGAAAGAGGTCAACCTGCTAAAGGACATGGTGCGTGCTCTTCCAAATTAA 2703 0.4306 MTPRVGDFENDNLSSTDDDDDDGFKEDMAALSRACMIVVPGADDYSAAEDDVQPMVPLTDDAGTAIVPVATDSDSDDQDDLECLKRVQSLYQPLSVLPPLEPAVAVSDDDDDVDDLETVRAIMKRFGDYNEGLHEGGINKLVEEDQISSLGCEGDIANGSIHYESDGGELCPFSQDPNEAATEELIENIEMQLSDFVESSEPDAWELSRLPQKKMSCPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEESKKIRNKIKILKDFQASCTRRTGNILSLKKDPRVQLISAKRSSARKKSKQKHKKVPAMCYGPEENSRVANYRMVLERFPLSLDRKKWSTVDRGNLFKGIKQQFQEMVLQLSLSLDRTSSEGLLGDADDMDNIFASVKDLEVTPERIRQFLPKVNWDLMASIYVGGHTGAECESRWLNYEDPLINQGAWTKEEDRSLLLIVQDMGIRNWFNIASSLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLCSAVTYFGDGNWQCVASVLERRTGTQCSNRWKKSLCPEKKGSFTPEEDIRLTVAAMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEKEDLRLEAAIGKHGYCWSKIAEEVPPRTDSQCRKRWKVLYPEQVPLLQEARKKQRAIIGSNFVDRKSERPTITLNDFLPLLALAPKSDVGASDICKKRKSSNVPKKTSSKKGAKRTKRTKEVPDTEVYHDDELYPVSTCSNLPKKKMRFKRRIKSSRNPPQELVDISCSDKVTYIEGSENQSTCIPNSENQDSDNIPLACFLRKKSNEILSRFNKKLSQTSFSRITDVPEQVESQNPSDDQGGLPHSCETVGTKKLLVQPNVTSDRRVRSDDDDDDHMTLACFLKNKPKKEVNLLKDMVRALPN* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1605 900 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 586 640 IPR017930 -
Pvu4g1605 900 MobiDBLite consensus disorder prediction 697 712 - -
Pvu4g1605 900 CDD SANT 491 535 IPR001005 -
Pvu4g1605 900 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 484 539 IPR017930 -
Pvu4g1605 900 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 16 717 - -
Pvu4g1605 900 MobiDBLite consensus disorder prediction 824 839 - -
Pvu4g1605 900 CDD SANT 594 635 IPR001005 -
Pvu4g1605 900 CDD SANT 542 585 IPR001005 -
Pvu4g1605 900 SUPERFAMILY Homeodomain-like 413 480 IPR009057 -
Pvu4g1605 900 SUPERFAMILY Homeodomain-like 487 581 IPR009057 -
Pvu4g1605 900 ProSiteProfiles Myb-like domain profile. 539 585 IPR001005 -
Pvu4g1605 900 CDD SANT 438 483 IPR001005 -
Pvu4g1605 900 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g1605 900 Gene3D - 433 483 - -
Pvu4g1605 900 ProSiteProfiles Myb-like domain profile. 586 636 IPR001005 -
Pvu4g1605 900 ProSiteProfiles Myb-like domain profile. 431 483 IPR001005 -
Pvu4g1605 900 SMART sant 435 485 IPR001005 -
Pvu4g1605 900 SMART sant 488 537 IPR001005 -
Pvu4g1605 900 SMART sant 334 432 IPR001005 -
Pvu4g1605 900 SMART sant 590 638 IPR001005 -
Pvu4g1605 900 SMART sant 539 587 IPR001005 -
Pvu4g1605 900 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 431 483 IPR017930 -
Pvu4g1605 900 Pfam Myb-like DNA-binding domain 439 500 - -
Pvu4g1605 900 MobiDBLite consensus disorder prediction 824 843 - -
Pvu4g1605 900 Gene3D - 490 538 - -
Pvu4g1605 900 MobiDBLite consensus disorder prediction 691 718 - -
Pvu4g1605 900 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 540 585 IPR017930 -
Pvu4g1605 900 Gene3D - 539 591 - -
Pvu4g1605 900 SUPERFAMILY Homeodomain-like 565 637 IPR009057 -
Pvu4g1605 900 Pfam Myb-like DNA-binding domain 593 634 IPR001005 -
Pvu4g1605 900 Pfam Myb-like DNA-binding domain 540 583 IPR001005 -
Pvu4g1605 900 ProSiteProfiles Myb-like domain profile. 484 535 IPR001005 -
Pvu4g1605 900 Gene3D - 593 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1605 Pvu-Chr4 43309332 43318471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1605 210 687 MYB-Related Transcription Factor Family AT3G18100 50.816 4.85e-166 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g1605 Myb_DNA-bind_6 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1605 K09422 - gmx:778073 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1605 4 43309332 43318471 Pvu4g1605 4 43309332 43318471 ECH