LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g1603	ATGAAGAACCTTCTTAAGAAGCTTCACATCATGTCTAACCGATCAGAGAATGAACAAGGGTCTTCTTCATCCAAGGGCAGCAAGTCCAATATTGGTTCATCTTCCAAGAAGATTTTGCGCTCAAAGCCCACTCAAAGTTCTGAGCAAAAGCCCTTATCTGGGCTCTCCAGTTGGTTGCATTCAGTTGCCAATAGGCAGAGTCCTAGTCCTCCTCCATCTTTGAGCCAGGCAGGGGGCGTGAGAATGGAGGCATCTGATGCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCAGATTCAGCTAGGCTTGATTCAGAGTCTAGTGCTTCCAGGGATCCTGAAGTGGAGGAAGAGTATCAGATACAGTTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGGTTATACACCAGGTGAAGTTGTGGCCTACCGGTATTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTTGGATGGTTTCTACGATCTGTATGGGAACTTAACTGAGTCAAAGCCTACAAGAATGCCTTCCCTTGAAGATTTGCAACTGCAAGGAACATCAATCTCAGGTAGTGGTTCGTGCGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCAAATTTGTTGAAACTTGTGCAAAAGGCCCAGGAGTTGACTGGCAGATCAAGTTCAGATATTGAAGTTATAGATAGCAATTTGGTTCGCAAGCTTGCAATATTTGTGGCTGACTATATGGGTGGACAAGTTGGAGATCCTGAAAGTATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTCAAAGCAACCCTTGGTAGCATACTTTTGCCACTTGGTTCTCTGACTATTGGATTGGCTCGGCATCGGGCATTGTTGTTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGCCGGTTGGTGAAGGGGCTGCAATATACAAGTTCCGACAACGTGGCTATAAACTTTGTCAAGATTGATGATGGAAGGGAATACATTGTTGATCTAATGGCAGATCCTGGAACACTTATTCCATCTGATGCAACTGGATCACAGATAGAGTGCGATGAATCTTCCTATGTGGCCAGTCCTTCATCTAGAGACCCTGATTCCTCACATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATACGAAGAAACTTTGGATTTGGGGATGTTGGACAAAGGAAACAGATCAAAACATATAGGTAAATTATCTGATGTAAGCGTGCCCTCTACGGGAAAGGAAGAATCAATAAGACCCTTGTTTGAATTTAAAAGCCCTCACAATGTTGAGAAGATCGCGGAGCAGGAAGCTCCTGGCAGACCTAATCATCCACATGTACATGCAAGATCTCCATCTTGGACTGAAGGGATCAGTTCTCCTGCAGTACGTAGGATGAAAGTCAAAGATGTTTCTCTATACATGATTGATGCTGCAAAGGAAAACCCTCACTTAGCCCAGAGACTTCATGACGTTTTACTTGAAAGTGGTGTGGTTGCTCCTCCAAATCTATTTTCTGAAATTTATGATGATGACTCAGGTTCCTCAACTGAGGCCTACTTTCCAACAGAAGAAAATGATGAACCTAAGCAGGGAAGTGGACAGAAAGAAGCTGAGCTTGATGGTAATCTCTTTCATGCTCGAGTTTTGCCTCCTTTGGCTCACAATAGAGTTCAGAGCAAAGCAAGTTCTAGTGATCAGGTAGAGCATTCTAAACCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTTATACAAGGGAACCAGCTGTACAGCATATACCATCTCAGGTAAAATATGGTCAAAATGTTGCTGCTGCTGCAGCTGCCGCCGCTGCTGTTGTTGCATCTTCTATGGTAGCTGCGGTGGCAAGATCTAGCATTGACTCAAACATAGATCTTCCAGCAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTAGTAGCAACAACTGCTGCTGTCAGTAAACAGTATGAACAAGGCAGTCGAAGCGATGGAGATACAGACAGTGCTGGTTATGACCTGAAGGGTAGTGGTGATGGAGAACATATAGCTTTAGGAGCAAATTCAGAAGCTGACCGAAGATCTGATAGATCAGTATTAAGTAATGATAGCACAAAATCTGACTCTGCATTAGATGATCAGGATGTTGCTGAGGTTGACATTCCGTGGGAGGAAATCTCCCTCGGTGAGCGTATTGGACTTGGATCATATGGGGAGGTGTATCGTGGTGAATGGCGTGGAACTGAAGTTGCTGTAAAGAGATTTCTAGATCAAGATATATCTGGTGAATCACTTGAAGAGTTCAAAACTGAAGTCAAAATAATGAAAAGATTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGACCTCAAAATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGAAGTTTGTATAGATTGCTTCATAGACAAAACAATCAATTAGATGAGCGAAGGCGTTTGAAAATGGCTATTGATGCTGCTCGAGGTATGAACTATTTGCACAACTGCACTCCAGTGATAGTGCATCGGGATTTGAAGTCCCCAAATCTTCTCGTTGACAAAAATTGGGTTGTGAAGGTATGTGATTTTGGCTTATCACGGATGAAGCATAGCACATTCCTTTCTTCCAGATCAACTGCAGGAACAGCTGAGTGGATGGCTCCCGAGGTGTTGAGAAATGAACCTTCAAATGAGAAGTGTGATGTATATAGCTTTGGGGTCATATTATGGGAGCTCTCTACTTTGCAGCAACCCTGGGGTGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAGCATCGCCGTCTTGACATTCCTGATGATGTAGACCCTACCATAGCAGACATTATCCGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTACATTTGTGGAAATATTGGCGGCTCTGAAGCCATTACAGAAGACAATTTTTAGCTCTCAAGTGCCTCGACCAAGTGCATCGGGGAAGCATGAGAAGGGTCAGTCATCGCGTGTTGTAGAAGACACAGCAAGATAG	3093	0.4423	MKNLLKKLHIMSNRSENEQGSSSSKGSKSNIGSSSKKILRSKPTQSSEQKPLSGLSSWLHSVANRQSPSPPPSLSQAGGVRMEASDAVSSGGLDVVSDSARLDSESSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPGYTPGEVVAYRYWNYNALGYDDKILDGFYDLYGNLTESKPTRMPSLEDLQLQGTSISGSGSCEAVLVNRAADSNLLKLVQKAQELTGRSSSDIEVIDSNLVRKLAIFVADYMGGQVGDPESMTRAWRSLSYSLKATLGSILLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTSSDNVAINFVKIDDGREYIVDLMADPGTLIPSDATGSQIECDESSYVASPSSRDPDSSHVASSSSGVGSSYEETLDLGMLDKGNRSKHIGKLSDVSVPSTGKEESIRPLFEFKSPHNVEKIAEQEAPGRPNHPHVHARSPSWTEGISSPAVRRMKVKDVSLYMIDAAKENPHLAQRLHDVLLESGVVAPPNLFSEIYDDDSGSSTEAYFPTEENDEPKQGSGQKEAELDGNLFHARVLPPLAHNRVQSKASSSDQVEHSKPVEGLGINLPLYTREPAVQHIPSQVKYGQNVAAAAAAAAAVVASSMVAAVARSSIDSNIDLPAAAAATATAAAVVATTAAVSKQYEQGSRSDGDTDSAGYDLKGSGDGEHIALGANSEADRRSDRSVLSNDSTKSDSALDDQDVAEVDIPWEEISLGERIGLGSYGEVYRGEWRGTEVAVKRFLDQDISGESLEEFKTEVKIMKRLRHPNVVLFMGAVTRPQNLSIVTEFLPRGSLYRLLHRQNNQLDERRRLKMAIDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPTIADIIRKCWQTDPKLRPTFVEILAALKPLQKTIFSSQVPRPSASGKHEKGQSSRVVEDTAR*	1031

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g1603	1030	Pfam	Ethylene-responsive protein kinase Le-CTR1	156	359	-	-
	Pvu4g1603	1030	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	1	1028	-	-
	Pvu4g1603	1030	Gene3D	Transferase(Phosphotransferase) domain 1	822	1006	-	-
	Pvu4g1603	1030	MobiDBLite	consensus disorder prediction	1005	1030	-	-
	Pvu4g1603	1030	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	862	874	IPR008271	GO:0004672\|GO:0006468
	Pvu4g1603	1030	SMART	serkin_6	743	998	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu4g1603	1030	SUPERFAMILY	Protein kinase-like (PK-like)	729	994	IPR011009	-
	Pvu4g1603	1030	MobiDBLite	consensus disorder prediction	703	718	-	-
	Pvu4g1603	1030	Gene3D	Phosphorylase Kinase; domain 1	736	820	-	-
	Pvu4g1603	1030	MobiDBLite	consensus disorder prediction	374	399	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g1603	Pvu-Chr4	43245035	43255790	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g1603	1	1013	MAP Kinase Kinase Kinase	AT1G73660	61.463	0.0	1116

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Pvu4g1603		PK_Tyr_Ser-Thr	8.1e-69	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g1603	-		-	vra:106769971	1760.35

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu2g3384	2	48718453	48727539	Pvu4g1603	4	43245035	43255790	PCT

Showing 1 to 1 of 1 entries