Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1602 ATGGAGCCATCCTCGATCTCCCCACCGCCAGCTCCGCCAGCAACCGCCGTCCCCTTCCCGGCCGACCCCAACGACCACCTACCGCCGCCCATTCCCGAGCCGCCGGCAAATCACCCGCCGTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTTTACAGGGACCAGCTTCCGCCGAATCACTCCAACTTGTTGACTCAGCACTTGACTCGGATGAAGACCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCAGCTGCCGCTGCAGCTGCTGCGGAGGACGCTGTGCCTGGGCCCTCTGCTTCGGCTACTCCCAGGCCCAGAGGCCGCCCTCGCAAGGCCCAAACCCCTGTCCACAACCTCCCCCAGCCTCTCGCGCAGGTTCAGGACGATGTAATGCCATCGCTTCAGCAGAATGCTGAGCCTGTCTGGGCCGCGCTCGGGCTTGCTGACGAGCCTGTGCAAGCTGAGAGCAGCAAGAAGCGTCCGGGCCGACCGAAGAAATACGCAACTGGCACCCCTGGAACGGGGCGGCGAGGGCGTCCTGTTGGCTCTGGAAAAGGCCCGGGTCGCCCTCCCAAGCCCAAGCCCGTTGCTTCAGATACTTCTGCCTCTGCCGGGCCGAAGAGACGCCCGGGCCGCCCGCCTAAAGACCAGAGCCAAGCAACTCAAATTCCATTTGCTCCATCTACTCCAACTGCCGGTGCTGTTGTGCCGGGCTCGGAGCCCGTGGCAGAACCGGTTCCTGCTGGTGATGGAATTATACTCGGGCCTAGAGTTCGAGGTCGACCGAAGAAGTTTGCTGATGAGATTATTCCCTCTGGCAGAGGCAGGGGAAGGGGTCGAGGGCGTGGCCGTGGCCGTGGTGGTGGTTTGCAGCTCATACAATTCGGAGTTAGGTCCGTTGGCCGCCCGAGGAAGGTGACAACTTTTGGTGGAGATCAACAAAATGCTGCTAATGAAGAGCTGAAGAGGAAGCTCGAACACTTTGAATCCCTGGCAGTGATTAAGCCTCATTTTAACCATCAAAGTCCAGTCACTGCAATTGCAGCTATTCAAGATTTGGAAGAGCTGGGAACTATGGACCTCAATGCACCACTAAGGGATGAAACAATTTCTCTGCAACAGGAGGTCCCACCACCTCAGGCACCGGTGCAGCAGCATCAGGTGCAGCCACCACAGCAACAACCTCCACCACCACAGCAGCAGCCACCACAGCAACACCTGGCACCATCACCACTGCAAACACAGCCACAGCTATTTCAGCAACCATTTCCCTCATTTCAGCTGCAGCCGGGCTTCCATCATCAGCAGCCACAGCTGCAGTTCCAGCAGCCACCACAGCAGCACCAGCTATTCCAGGCACCCCCATCGCACCACCAACAGTTTCATCCTTAG 1476 0.5867 MEPSSISPPPAPPATAVPFPADPNDHLPPPIPEPPANHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYRDQLPPNHSNLLTQHLTRMKTSGMLVMVKKSYALPRSAAAAAAAAAAEDAVPGPSASATPRPRGRPRKAQTPVHNLPQPLAQVQDDVMPSLQQNAEPVWAALGLADEPVQAESSKKRPGRPKKYATGTPGTGRRGRPVGSGKGPGRPPKPKPVASDTSASAGPKRRPGRPPKDQSQATQIPFAPSTPTAGAVVPGSEPVAEPVPAGDGIILGPRVRGRPKKFADEIIPSGRGRGRGRGRGRGRGGGLQLIQFGVRSVGRPRKVTTFGGDQQNAANEELKRKLEHFESLAVIKPHFNHQSPVTAIAAIQDLEELGTMDLNAPLRDETISLQQEVPPPQAPVQQHQVQPPQQQPPPPQQQPPQQHLAPSPLQTQPQLFQQPFPSFQLQPGFHHQQPQLQFQQPPQQHQLFQAPPSHHQQFHP* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1602 491 MobiDBLite consensus disorder prediction 1 40 - -
Pvu4g1602 491 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu4g1602 491 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu4g1602 491 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu4g1602 491 PRINTS Histone H5 signature 126 140 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu4g1602 491 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pvu4g1602 491 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu4g1602 491 CDD H15 36 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu4g1602 491 SUPERFAMILY "Winged helix" DNA-binding domain 32 110 IPR036390 -
Pvu4g1602 491 MobiDBLite consensus disorder prediction 288 303 - -
Pvu4g1602 491 PANTHER HISTONE H1 9 396 - -
Pvu4g1602 491 MobiDBLite consensus disorder prediction 411 433 - -
Pvu4g1602 491 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Pvu4g1602 491 PRINTS AT-hook-like domain signature 233 244 IPR017956 GO:0003677
Pvu4g1602 491 PRINTS AT-hook-like domain signature 282 292 IPR017956 GO:0003677
Pvu4g1602 491 SMART AT_hook_2 284 296 IPR017956 GO:0003677
Pvu4g1602 491 SMART AT_hook_2 235 247 IPR017956 GO:0003677
Pvu4g1602 491 SMART AT_hook_2 325 337 IPR017956 GO:0003677
Pvu4g1602 491 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Pvu4g1602 491 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Pvu4g1602 491 Gene3D - 34 119 IPR036388 -
Pvu4g1602 491 MobiDBLite consensus disorder prediction 118 149 - -
Pvu4g1602 491 MobiDBLite consensus disorder prediction 180 317 - -
Pvu4g1602 491 PANTHER HISTONE H1-LIKE 9 396 - -
Pvu4g1602 491 MobiDBLite consensus disorder prediction 405 491 - -
Pvu4g1602 491 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu4g1602 491 MobiDBLite consensus disorder prediction 1 39 - -
Pvu4g1602 491 MobiDBLite consensus disorder prediction 434 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1602 Pvu-Chr4 43225070 43230515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1602 44 109 Single Myb Histone (SMH) Gene Family AT1G49950 39.394 3.00e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1602 - - vun:114182142 588.956