Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1597 ATGGAGGAAGTGGATTCAATACCAAAGTCTCTGATGGAAAATCTCCTTGGCCTTTTGAGGGTTCGCGTCAAGCGTGGTATCAACCTTGCCGTTCGTGATGTCCGAAGCAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACCCGTTTCATTAGAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATTATAGATCCGAATCATCAAGTTAAACTGATCGTGTATGATCATGACACCTTTAGCAAAGATGACAGAATGGGAGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCCTTGAAGAGCAACATAACTGGCCTTCCAAATGGTACTGTAATCAAAAGAACACAACCAAGCGCGGAGAACTTCCTGGCTGATGAGAGCTGCATCACTTGTGTCAATGGCAAGCTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATTCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGA 531 0.4218 MEEVDSIPKSLMENLLGLLRVRVKRGINLAVRDVRSSDPYVVIKMFNQKLKTRFIRKDVNPEWNEDLTLSIIDPNHQVKLIVYDHDTFSKDDRMGDAEFDIFPFIEALKSNITGLPNGTVIKRTQPSAENFLADESCITCVNGKLVQDMILRLQNVECGEVEIQLQWIDLPGSKGI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1597 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Pvu4g1597 176 ProSiteProfiles C2 domain profile. 1 117 IPR000008 -
Pvu4g1597 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 8 175 IPR044562 -
Pvu4g1597 176 CDD C2_ArfGAP 16 159 - -
Pvu4g1597 176 Pfam C2 domain 17 101 IPR000008 -
Pvu4g1597 176 Gene3D C2 domain 13 174 IPR035892 -
Pvu4g1597 176 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 8 175 - -
Pvu4g1597 176 SMART C2_3c 18 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1597 Pvu-Chr4 43186492 43189050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1597 49 176 C2H2 Transcription Factor Family AT1G70790 57.692 7.59e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1597 - - gmx:100810504 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2386 1 49208369 49210769 Pvu4g1597 4 43186492 43189050 ECH
Pvu2g0993 2 17921506 17924314 Pvu4g1597 4 43186492 43189050 ECH
Pvu3g0329 3 3072941 3076157 Pvu4g1597 4 43186492 43189050 ECH
Pvu4g1597 4 43186492 43189050 Pvu4g1597 4 43186492 43189050 ECH
Pvu2g3398 2 48827486 48828628 Pvu4g1597 4 43186492 43189050 PCT