Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1583 ATGGAGAGGGAATTCTTTGGCTTGAGTTCCAAAAATGGTGCATGGACTACCATGAAAGATGATGCTGCTAACAAACCAAAAGACCCAGTGAGGAGTTCAGGAATGCGGTGCTCATTCCCAAACAAGGTTTCAGTTCTTCCTCAGTTCCTGTCCTTCAAGACCAATCAGGAAGACAGACCTAGAAAGACTATTCTTGATCCACTAGCTTCATCTGGATATATGAACATGCCAACTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGCCCCAGAGAACTTTGTCCATAGGCAAGCATAGTGCTGGAAACAAACAGGGAATGGTAGTTTATCCCATGCAATGCTGTGATGCACAATCTGCATGCCTTCAGGAAGCAAGAACATTTCCAGTTTCCAATCAATCAAATCAAGTGAGTCCTGTTCTTCAATCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGGCATAAAACCACAACCTCTTGGTTCCAAATCTTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGGAATAGTTCCAATTCCTCTGCAATGGCTACTCAGCTCACCATTTTCTATGCTGGTTCCGTATGTGTTTATAATGACATAACTCCCGAGAAGGCCAAGTCTATCATGTCAATGGCTGGAAATGGCTCTACTCCAACTCAGACAATGGCAGTTTCCACAGCTAAACTTCAGACAGCAGTTTCTATTCCCTTGAAAGATGATGGTTTCATTATGAGCCAATCCTATCCTCCTTCACCCCTCCCAAGCCCTCTCTCACTGACCTCTGATGTCAATTCTCAGCCAGGAGGAGGATCTTCTAGCAACAATAAACTTGCAATTATAAGACCAATTGTAGGACCTTCAACTGCCCCTACTAACCATTTGGAGTCACCTATTATTGTTGGTTCTGTAGGATCTGCATCTAAGGAAAATGCTCAACCAGGTATACTATGCCTAGTCTCTCCAGTATACTTGCCTCAGGCACGCAAAGCATCCTTAACTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGATGAGCACATCACCATACTTTTACATGAGCAAGAAATCATCTGAATGCAGCTCATCTGGATCAGACAGTGTTAGTTTCTCCTTTAACATCTCTGGATCCTGTTCTCTTCCAGCCACCAACTAG 1200 0.4325 MEREFFGLSSKNGAWTTMKDDAANKPKDPVRSSGMRCSFPNKVSVLPQFLSFKTNQEDRPRKTILDPLASSGYMNMPTKEAFESNQKPFLGVPQRTLSIGKHSAGNKQGMVVYPMQCCDAQSACLQEARTFPVSNQSNQVSPVLQSNLATTGLNMVNSGIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSNSSAMATQLTIFYAGSVCVYNDITPEKAKSIMSMAGNGSTPTQTMAVSTAKLQTAVSIPLKDDGFIMSQSYPPSPLPSPLSLTSDVNSQPGGGSSSNNKLAIIRPIVGPSTAPTNHLESPIIVGSVGSASKENAQPGILCLVSPVYLPQARKASLTRFLEKRKERMMSTSPYFYMSKKSSECSSSGSDSVSFSFNISGSCSLPATN* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1583 399 Pfam tify domain 199 229 IPR010399 -
Pvu4g1583 399 SMART tify_2 195 230 IPR010399 -
Pvu4g1583 399 MobiDBLite consensus disorder prediction 273 292 - -
Pvu4g1583 399 ProSiteProfiles Tify domain profile. 195 230 IPR010399 -
Pvu4g1583 399 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 266 IPR040390 -
Pvu4g1583 399 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 265 399 IPR040390 -
Pvu4g1583 399 MobiDBLite consensus disorder prediction 269 292 - -
Pvu4g1583 399 Pfam Jas motif 341 365 IPR018467 -
Pvu4g1583 399 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 265 399 - -
Pvu4g1583 399 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 35 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1583 Pvu-Chr4 43046670 43052198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1583 35 383 Tify Gene Family AT3G17860 37.500 3.99e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pvu4g1583 tify 9.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1583 K13464 - gmx:100807288 552.747