Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1578 ATGCCATTGATTCGCACTACTCCACCGCTTCCCTGTGCCGTTTCCACACTCACCAATGCACCACCATCATCATCTTCCACTCTCTCTGCTGCCACATTCGGTTCCCACCTTCTGCGCAAAATTCAGAACCCAGTTTTTGGATTTTCCGCAACCAGGAATCGCTCGCGTGCTGCGGTCATCCGAGCCAAAGCAGGGGCCGATTACTATTCCACCTTGAACGTAAGCCCCGGTGCCTCGCTGCAAGAAATCAAGGCCTCCTATCGCAAGCTGGCGCGCAAGTACCATCCAGATATGAACAAAAGCCCGGGGGCTGAGGAGAAATTCAAAGAAATAAGTGCTGCATATGAGGTCCTATCAGATGATGATAAAAGATCTTTATATGATCGCTTTGGTGAGTCGGGTCTTCAACAAGAAAATGGAGGATCAAGTGGCGCCCCTGGGGTTGATCCTTTTGATTTATTCGAAACATACTTTGGTCGTTCTGATGGAATATTTGATGATGGTGATGAAGGGGGAATGTTCAATTTTGGAAACAAGAGAAACCGTACTCATGATATTCGATATGACCTTAATTTGAGCTTTGAAGAATCAATATTTGGAGCACAGAGGGAGATTGAAGTTTCCTGTTTTCAGACATGTAGCACGTGTGATGGTACGGGAGCTAAGTCAAAGGATTGCATTAAGCAATGCAGAAATTGTGGTGGCAGAGGAGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAATTATGTCTCAGGTTTCTACCTGCTCTAAGTGTAGTGGCCTTGGTAAAATAATCTCAGATTACTGTCGAAGGTGTGATGGCAATGGTCAGGTGCAATCTAAACAAACAATAGAAGTGGACATTCCTGCAGGAGTCAATGATGGAGACACAATGCAAATTCAAGGACAAGGGAATTTTGATAAAAAGAGGCAAATTACTGGGGATCTTTTGGTTGTCCTGCATGTAGATGAAAAGCAAGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATATTGGGGTCAGTTAAAAAGGTAGATACGGTTGAAGGTTTACGGGATCTTCATATTCCTTCAGGGATTCAACCTGGAGAATCAGTGAAGCTGTCACGTTTGGGAGTTCCAGACATGAAAAAACCGTTTGTTCGAGGCAATCATTACTTCATTGTGAATGTTCTTATTCCAAAAAATATCAGTGGAACCGAACGTGTGCTTGTTGAGCAGTTAGCTTCACTAAGAGCTTCTAACAAAAGGGATCCACTGTCTTCTGGTGACAATGGAATACCTAAAAGAAAGATCAATGAATTCACAAAGAGGAGGGATCCAAGGGGCGATGGTTCAAGCAAGGGAATAAAAAAAGTTGACTCTCTATGGGGATCGATCAAGAACTTCTTGAGTGGAGGACAGTCCAATGAAAGGTTTGCTTCAATTAGCATGGATACATCAGCTTTAATACGGAGATATGGTGACCAAAATCCGTCTGTCCTTAATTCCTTTTTTGTTGTTTTCGTTATAACTTGGATTTTTGCCTCGATAGCAAAGTCTAAGTACTCGATGCTTCAGAAAAGATCTGAGTCCTTTAATAGAACACGGTGA 1623 0.4282 MPLIRTTPPLPCAVSTLTNAPPSSSSTLSAATFGSHLLRKIQNPVFGFSATRNRSRAAVIRAKAGADYYSTLNVSPGASLQEIKASYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDDKRSLYDRFGESGLQQENGGSSGAPGVDPFDLFETYFGRSDGIFDDGDEGGMFNFGNKRNRTHDIRYDLNLSFEESIFGAQREIEVSCFQTCSTCDGTGAKSKDCIKQCRNCGGRGGEMKSQRTPFGIMSQVSTCSKCSGLGKIISDYCRRCDGNGQVQSKQTIEVDIPAGVNDGDTMQIQGQGNFDKKRQITGDLLVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVDTVEGLRDLHIPSGIQPGESVKLSRLGVPDMKKPFVRGNHYFIVNVLIPKNISGTERVLVEQLASLRASNKRDPLSSGDNGIPKRKINEFTKRRDPRGDGSSKGIKKVDSLWGSIKNFLSGGQSNERFASISMDTSALIRRYGDQNPSVLNSFFVVFVITWIFASIAKSKYSMLQKRSESFNRTR* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1578 540 SUPERFAMILY Chaperone J-domain 66 168 IPR036869 -
Pvu4g1578 540 Hamap Chaperone protein DnaJ [dnaJ]. 64 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pvu4g1578 540 MobiDBLite consensus disorder prediction 425 460 - -
Pvu4g1578 540 CDD DnaJ_C 185 407 - -
Pvu4g1578 540 CDD DnaJ_zf 213 277 IPR001305 GO:0031072|GO:0051082
Pvu4g1578 540 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 412 IPR008971 GO:0006457|GO:0051082
Pvu4g1578 540 ProSiteProfiles Zinc finger CR-type profile. 200 282 IPR001305 GO:0031072|GO:0051082
Pvu4g1578 540 CDD DnaJ 67 120 IPR001623 -
Pvu4g1578 540 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 72 427 - -
Pvu4g1578 540 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 323 IPR008971 GO:0006457|GO:0051082
Pvu4g1578 540 Pfam DnaJ central domain 213 277 IPR001305 GO:0031072|GO:0051082
Pvu4g1578 540 Pfam DnaJ domain 67 128 IPR001623 -
Pvu4g1578 540 PRINTS DnaJ domain signature 69 87 IPR001623 -
Pvu4g1578 540 PRINTS DnaJ domain signature 87 102 IPR001623 -
Pvu4g1578 540 PRINTS DnaJ domain signature 103 123 IPR001623 -
Pvu4g1578 540 PRINTS DnaJ domain signature 123 142 IPR001623 -
Pvu4g1578 540 Gene3D - 330 421 - -
Pvu4g1578 540 Gene3D - 184 319 - -
Pvu4g1578 540 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Pvu4g1578 540 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 200 280 IPR036410 -
Pvu4g1578 540 Pfam DnaJ C terminal domain 186 404 IPR002939 -
Pvu4g1578 540 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Pvu4g1578 540 Gene3D - 213 277 - -
Pvu4g1578 540 PANTHER EXPRESSED PROTEIN 72 427 - -
Pvu4g1578 540 Gene3D DnaJ domain 64 167 IPR036869 -
Pvu4g1578 540 SMART dnaj_3 66 123 IPR001623 -
Pvu4g1578 540 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1578 Pvu-Chr4 42992075 43001935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1578 68 128 C2H2 Transcription Factor Family AT1G74250 43.284 2.11e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1578 K03686 - gmx:100782135 874.389