Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1566 AATTGTGAAAGTATGATTTCTCATGACGAAATGGCGATACTGATGGAGTACATGGACAATGGCAGCCTTGAAAGTGCCCTAGCCACCAATGGCACCTTCTCCGAAGAGAGACTTGTGGTAGTGGCGCGTGACATCCTCAATGGTCTCGCCTACCTCCATGCACGCAACATCATTCATCGCGACATCAAGCCTGCAAACATCCTCGTAAACACGAAAGGCGAGGTGAAGATCGGTGACTTCGGAGTTAGCAAAGTGGTGAGTGACACATTGGAGATGTGCAACTCTTACGTGGGCACAAACGCGTACATGAGTCCTGAACGGTTCAACCCTGATGCGTATGGAGGGAGCTATGATGGTTTTGCCGGTGATGTGTGGAGCTTTGGCTTGAGCCTCTTTGAACTCTATGTGGGTCACTTACCATTTCTCGAAGGTGGTGAAAGGCTGAACTGGGCCACCCTTGTGTGTGCCATTTGCTTCAATGAGCCACCAAGCTTGCCTGAGACTGCATCAATGGAGTTTCGGAACTTCATGGCGTGTTGCCTGAAGAAGGAGCCTGGTGAGAGGTGGACCACAACTCAACTCTTAACTCATCCATTTATATGCAAAGACCTAAGAAGCTTCTAG 624 0.4936 NCESMISHDEMAILMEYMDNGSLESALATNGTFSEERLVVVARDILNGLAYLHARNIIHRDIKPANILVNTKGEVKIGDFGVSKVVSDTLEMCNSYVGTNAYMSPERFNPDAYGGSYDGFAGDVWSFGLSLFELYVGHLPFLEGGERLNWATLVCAICFNEPPSLPETASMEFRNFMACCLKKEPGERWTTTQLLTHPFICKDLRSF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1566 207 Gene3D Transferase(Phosphotransferase) domain 1 2 206 - -
Pvu4g1566 207 SMART serkin_6 2 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1566 207 SUPERFAMILY Protein kinase-like (PK-like) 5 202 IPR011009 -
Pvu4g1566 207 PRINTS Tyrosine kinase catalytic domain signature 15 28 IPR001245 GO:0004672|GO:0006468
Pvu4g1566 207 PRINTS Tyrosine kinase catalytic domain signature 51 69 IPR001245 GO:0004672|GO:0006468
Pvu4g1566 207 PRINTS Tyrosine kinase catalytic domain signature 122 144 IPR001245 GO:0004672|GO:0006468
Pvu4g1566 207 PRINTS Tyrosine kinase catalytic domain signature 169 191 IPR001245 GO:0004672|GO:0006468
Pvu4g1566 207 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 202 - -
Pvu4g1566 207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Pvu4g1566 207 Pfam Protein kinase domain 4 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1566 207 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 2 202 - -
Pvu4g1566 207 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1566 Pvu-Chr4 42842574 42843228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1566 10 204 MAP Kinase Kinase Gene Family AT1G18350 57.436 7.33e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Pvu4g1566 Pkinase 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1566 K20604 - pvu:PHAVU_004G1479001 431.024