Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1562 ATGGTGTTGGGATGGAGAAGGAGGAAGGGAAACAGCAAGCAGAGCAGAGGTGGGAAACCCGTGATGGAGGTGGTGGTTCCCAACCACTTCAGGTGTCCAATTTCTCTTGACTTGATGAAGGATCCTGTGACACTGTCAACTGGGATCACCTATGACAGGGAGAATGTGGAGAGGTGGTTTGAAGAAGGGAACATCACATGTCCTGTTACCAACCAGGTTGTGAGGAACTTTGACATGATTCCAAACCATTCTCTCAGGATAATGGTCCAAGATTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCAACACCAAGGATACCGATTAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAAGTGAAGGACTCAGCAAGGGTTTTGGACCAATATGGTTGCCTTGAATTGCTGCAGAGGATGAAGAAGTGGGGTGGGGAGAGTGAGAGGAACAAGAGATGCATAGTGGATAATGGAGCACCTGTGGCATTGGCTTCGTCCTTTGATGCATTTGCCAATGACTCAGTGGAGAGAAATGTGGTGGTTCTTGAGGAGATTTTGTCAGCTCTGAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTCCTTGGGATCTCTGGCTTCTCTGAGTTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAGGAGCTTCTTTCCTTTGGTGATGTGCAGCATGTTGAGGCCTTGTCACAAATTGAAGGGGTGAATGAGCTCTTGGTGGAGTTAATCAACAAGAGGGTTAGCTCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACTTGGTCTCATCCTCTTCCAATTCCAGTGAGAAGATGAAATTGGCATTTGTTGAATTGGGTTTGGTTTCTTCTTTGCTTGACATTCTCATTGACTCAGACAAAAGCAGGTATGAGAAGGCTTTGGCCATTTTGGACTCTCTGTGCAGCTGTGAAGAAGGAAGGAACAAAGCTTGTGGGAATGACCTAACAATTCCTCTTTTGGTGAAGAAAATCCTTAGAATTTCACCTTTGACCACAGATTATTCTGTGTCTGCCCTTTGGAAGGTGTGCAAGTTTGGAGAAAAAGATGAAGGAAGAACCCTTCTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGTTGCAAGTTGGTTGTGGTGATGAGACTAAGGAGAAAGCAACAGAACTTCTGAAATTGATGAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1314 0.4536 MVLGWRRRKGNSKQSRGGKPVMEVVVPNHFRCPISLDLMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRIMVQDWCVENRQHGVERIPTPRIPISPIEVAELLMQVKDSARVLDQYGCLELLQRMKKWGGESERNKRCIVDNGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAHKSLGSLASLSCMVWFLKHQDLSGKEKSIVALKELLSFGDVQHVEALSQIEGVNELLVELINKRVSSTITKASLRVVWYLVSSSSNSSEKMKLAFVELGLVSSLLDILIDSDKSRYEKALAILDSLCSCEEGRNKACGNDLTIPLLVKKILRISPLTTDYSVSALWKVCKFGEKDEGRTLLEALQVGAFQKLLLVLQVGCGDETKEKATELLKLMNPYRAELECIDSDYKNVKRSF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1562 437 SUPERFAMILY ARM repeat 180 416 IPR016024 -
Pvu4g1562 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 437 - -
Pvu4g1562 437 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Pvu4g1562 437 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Pvu4g1562 437 PANTHER WDSAM1 PROTEIN 15 437 IPR045185 GO:0061630
Pvu4g1562 437 CDD RING-Ubox_PUB 30 72 IPR045210 -
Pvu4g1562 437 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Pvu4g1562 437 Gene3D - 115 416 IPR011989 -
Pvu4g1562 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Pvu4g1562 437 SUPERFAMILY RING/U-box 19 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1562 Pvu-Chr4 42808030 42809733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1562 5 437 U-box Gene Family AT5G37490 43.084 2.93e-112 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1562 - - gmx:100794340 753.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3415 2 48911860 48913194 Pvu4g1562 4 42808030 42809733 PCT