Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1557 ATGAAGACTTTCTCCTTAATTCAACTACCCCACCATTTTTTGTGTGCAAGATTCTTCTCTTACACAACCACGAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCAGGCATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGACCTTGTTCTTGAAGAAACAAGGTTCGAGCAATGCGGTTGCTGCTAGAACTATCAACAAGTCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAAGTCTTGGTATCTTGCAGGAAGAGAGCTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTGGAATCTCTTTTTGAAGAGCATGGTGACACTCTGGTGGATGTAGTGGAAAACTATCCAAATCCACCCGTTAAGGACAAATCAGAAGTGCTAGTTTCTCCTTCTAGTCCAGTGTTAGACTCCAAAAAGCTTAAAGCTGTGTCACTAGTGAGTGAGACAGACCCAGATGGTGGCAATCTGCGCCCTCATATTGTCTATCTCATAGAACTTGGTATGGATATTGAGCAGATTCGTAGTATAACACACCGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAGAGAGCACATTCCCACTATCCTCAGTAAAAGGCCTCAATTATGTGGTATCAGTTTATCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAATCATTGGGTGTTGATGAGAAGCAATGGCCAAAGCTGATCTATCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTCCTTCATGAATTGGGCCTCTCTGAAGAGAATATAGGGAAGATTTTAACTCGTTGCCCCAATATCGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAAAATTTTGGTCTTAGCATTGAGGCCAACCTAAAACCTATAACAGCATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAAATCTGAGCTGGTTAAGTTCCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTTCAATTATGGAGAAATCTGGAGTAAGGTTACTTCTGAATCAGGTTCTTTCTCTGTCAAGCAGCAACTTTGACAAGGCCTTGAAAAAGAAAATGAAAAAAATGCAAGATGGTTAA 1416 0.4075 MKTFSLIQLPHHFLCARFFSYTTTRTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGSSNAVAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDTLVDVVENYPNPPVKDKSEVLVSPSSPVLDSKKLKAVSLVSETDPDGGNLRPHIVYLIELGMDIEQIRSITHRFPAFAYYSLEGKIKPVVEFFLELGVPREHIPTILSKRPQLCGISLSENLKPTMKFLESLGVDEKQWPKLIYRFPALLTYSRQKVMESIDFLHELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYSLEKRIKPRFSIMEKSGVRLLLNQVLSLSSSNFDKALKKKMKKMQDG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1557 471 Pfam mTERF 291 457 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 Pfam mTERF 54 301 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 PANTHER CGI-12 PROTEIN-RELATED 23 469 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Pvu4g1557 471 Gene3D Transcription termination factor 3, mitochondrial 249 467 IPR038538 -
Pvu4g1557 471 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1557 Pvu-Chr4 42761286 42764707 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu4g1557 mTERF 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1557 K15032 K12177 gmx:100781900 810.831