Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1554 ATGCCCCAGAATAAGATTTTCCGAGAGCAATCATCGAATCAGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTGCAGTGGAGGGGATTCACCCTTTGATACATGGCCACAACAAGCAGATGATGACGATGCTGAAGGCTTCAAATCCCACAGTGATGGTTCAATCAAAGACACACAACTGTCCTTAGCCAACTCTACAAGTGCTGTCACTGCTGCTGCTCCCTCTGAGGCTGAAACCACCTGGAGGAAGAGAAACCTTGTCGGACTCAGCCATCATCGGGTTTCCGAGGCTCAAATAAGGCTCATCAATGGAATCCCTCTCTACAGTAACCTTTCTAACAACAGTGCTACAGTTCCCTCAATAGATAGAAGCCCCACCAACAAGTTTTCCTTTTCTTCTCTATATGCAGTTCCACACCCTCCTTGTTCTGCCAATTCGGCTCCTAACTATAGTTATAATGGTGCTGTTGGGGGTGTAGCAGGAGAACCCATCTCAAGGCCCCAACAGTTTCAGTACTTTGATTACCCTCAGCAGCAGTTTGGGAACAGTACAAATTTTGGAGCTTCTGAATTCCCTAATGGATTTGTGAGGTCAAGAATGTTGCCAAGGCAACAAAGTAATAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACCAGCTCTCTTCACAATCGCTTTGTTCATGCTGTTCAACTTCTTGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTGAAAGATCTAACACTAGCTCATGTCAAGAGCCATTTGCAGATGTATCGAACTGTTAAGAACACTGACAAACCTGCAGCTTCTTCAGATGGGGATGAGGATTTCATGTCCCTAACAGTCCCAAATAATCAAAATAAGAATTTTTTACCCAATCAGAGAGGAGCCTCCATGGATTGTGACATGGGCTACACTTCCAGCAATCTATGGGCTAATTCTTCTACCAG 995 0.4503 MPQNKIFREQSSNQIPDLSLHISLPNSAPSSICSGGDSPFDTWPQQADDDDAEGFKSHSDGSIKDTQLSLANSTSAVTAAAPSEAETTWRKRNLVGLSHHRVSEAQIRLINGIPLYSNLSNNSATVPSIDRSPTNKFSFSSLYAVPHPPCSANSAPNYSYNGAVGGVAGEPISRPQQFQYFDYPQQQFGNSTNFGASEFPNGFVRSRMLPRQQSNKRNMRAPRMRWTSSLHNRFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTVPNNQNKNFLPNQRGASMDCDMGYTSSNLWANSST 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1554 331 MobiDBLite consensus disorder prediction 30 62 - -
Pvu4g1554 331 Pfam Myb-like DNA-binding domain 223 274 IPR001005 -
Pvu4g1554 331 SUPERFAMILY Homeodomain-like 219 276 IPR009057 -
Pvu4g1554 331 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 331 - -
Pvu4g1554 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 222 275 IPR006447 GO:0003677
Pvu4g1554 331 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 331 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pvu4g1554 331 Gene3D - 221 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1554 Pvu-Chr4 42742932 42745259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1554 15 288 G2-like Transcription Factor Family AT5G16560 39.100 9.25e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu4g1554 Myb_DNA-binding 7.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1554 - - pvu:PHAVU_004G1468001 602.823