Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1548 ATGGAAAATTCTTCATCTTCTTCCTCTTCAAATTCCATATATCGAGAGTGTCTCCGCAACCATGCAGCGAGCCTAGGCAGCTACGCTACAGACGGTTGCGGAGAGTTCACACTCGATATAGATGTCTCCTCCTCCACTCTCCAGTGCGCAGCTTGCGGTTGTCACCGCAACTTCCACCGCAAGGTGACGTGTCCTCTTGCGGTGGAAGGGTTGGCTGGAGGGGGAAGTGGAGACATGATGGAGTACTCCGGAGGAGATGTGGGGAGAATGGAGGTGGGGGAGAGGAGCAGCAGGAAGAGGTTCAGGACAAAGTTCAGTGCAGAGCAGAAGGAGAAGATGCTGGGGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGAGGTGGATGATGAGATTGAGAGGTTTTGTAAAAGTGTTGGAGTGACTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTCTCTTCTCTCACTCAGTGA 519 0.5048 MENSSSSSSSNSIYRECLRNHAASLGSYATDGCGEFTLDIDVSSSTLQCAACGCHRNFHRKVTCPLAVEGLAGGGSGDMMEYSGGDVGRMEVGERSSRKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1548 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Pvu4g1548 172 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
Pvu4g1548 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 162 - -
Pvu4g1548 172 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
Pvu4g1548 172 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
Pvu4g1548 172 Gene3D - 83 162 - -
Pvu4g1548 172 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 98 156 IPR006455 -
Pvu4g1548 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1548 Pvu-Chr4 42678869 42679529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1548 14 155 ZF-HD Transcription Factor Family AT1G14440 41.398 2.12e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu4g1548 ZF-HD_dimer 8.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1548 - - vun:114182488 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3421 2 48938847 48939320 Pvu4g1548 4 42678869 42679529 PCT