Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1546 ATGGATGGTGATAATGGTCTTAACATCCGTAATTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAGAAGCCTTTAATCGGAGGGCGCAATGCTGCAGTTTTATCTGGCACTAATGGGGCATTTCACCACAGGGACATTGGCATGTCCCAAACTACGTACCCTATGGAATACATGAGGGATGCTTGGATGAGTAGTCAGAGAGAGAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCGGAGACTTCTTCGGCACATCATATTCAAATGATTCCACCACCGGAATTGCCGAAGGAAGAAAGGGCAGTGGAAGAGGAACCTGTTGTTGAGAAGGCAAGTGGGGGCACTCGTAAGAAAAGACAGAGCCCCAAGGTGCCCAAATCTCCCAAGGCCAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAAAATGCTCCCACAGTGCAACGTGCAAGGGTTCCCAAGAAAACTACTGAAATTGTAATAAATGGAATTGACATGGATATTTCTAGTATTCCAATCCCTGTTTGTTCATGCACTGGAGGTCCTCAACAGTGTTACAGATGGGGCTCTGGTGGTTGGCAATCTGCATGTTGCACAACAGGCATGTCAGTGTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCGTTTAAGAAAGTTTTAGAGAAACTTGCAGCCGAAGGTTATAACTTTTCTAATCCGATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACCATTAGGTAG 852 0.4613 MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMSQTTYPMEYMRDAWMSSQREKYMNMIPTNHNYGGIPETSSAHHIQMIPPPELPKEERAVEEEPVVEKASGGTRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVQRARVPKKTTEIVINGIDMDISSIPIPVCSCTGGPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1546 283 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 1 283 - -
Pvu4g1546 283 MobiDBLite consensus disorder prediction 135 154 - -
Pvu4g1546 283 PANTHER - 1 283 IPR010409 -
Pvu4g1546 283 Pfam GAGA binding protein-like family 1 283 IPR010409 -
Pvu4g1546 283 SMART GAGA_bind_2 1 283 IPR010409 -
Pvu4g1546 283 MobiDBLite consensus disorder prediction 100 171 - -
Pvu4g1546 283 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1546 Pvu-Chr4 42645650 42647316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1546 1 283 BBR or BPC Transcription factor family AT2G01930 51.342 1.04e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pvu4g1546 GAGA_bind 3.5e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1546 - - gmx:100784091 516.538