Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1545 ATGTTAGCGAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGCCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCCCTGTCGCCAAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGAAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACCTGCTTGCACCATGATCCTTGTCATGCTTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGTACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCCGCGTGCCTCTCTAGAACAGCCTCAAGCCCAAGTCCTTCGAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGAATCATAATACCAAAGCCAACAGAAGCACCCACAATTTTCATGAATAACCCTACTGCTGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAACAAACTCCACCCCAACTTGGATCTCCAACTCTCAACTCCAACCACCACCACCAACAACAACAACAACAGTTCAAATGTTGCAAACCCCATTGATGCTCTAATATCAACATCGTTATCACCTAAGAGGGATCACCGTGAGAACCATTCAACCCATCTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAACGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAATGCGAAGCAGCCAAACATGGCCTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAAGTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACATGCCACGCTTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTTGAAAACGATAATGCAAAAGATCACGCCAAAGACAACAACTAA 1404 0.4772 MLANNLSPSSVPTSEPFPCTENATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEAPTIFMNNPTAAITTAETSSKNNNKLHPNLDLQLSTPTTTTNNNNNSSNVANPIDALISTSLSPKRDHRENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNAKQPNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIEVAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNAKDHAKDNN* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1545 467 MobiDBLite consensus disorder prediction 306 340 - -
Pvu4g1545 467 Gene3D Classic Zinc Finger 35 97 - -
Pvu4g1545 467 MobiDBLite consensus disorder prediction 194 220 - -
Pvu4g1545 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Pvu4g1545 467 MobiDBLite consensus disorder prediction 1 24 - -
Pvu4g1545 467 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pvu4g1545 467 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Pvu4g1545 467 Gene3D Classic Zinc Finger 119 195 - -
Pvu4g1545 467 Coils Coil 354 409 - -
Pvu4g1545 467 PANTHER OS03G0310200 PROTEIN 1 451 IPR039288 GO:0009630
Pvu4g1545 467 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Pvu4g1545 467 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 451 - -
Pvu4g1545 467 MobiDBLite consensus disorder prediction 193 222 - -
Pvu4g1545 467 MobiDBLite consensus disorder prediction 249 283 - -
Pvu4g1545 467 MobiDBLite consensus disorder prediction 1 44 - -
Pvu4g1545 467 MobiDBLite consensus disorder prediction 295 340 - -
Pvu4g1545 467 SMART c2h2final6 57 79 IPR013087 -
Pvu4g1545 467 SMART c2h2final6 98 128 IPR013087 -
Pvu4g1545 467 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1545 Pvu-Chr4 42627978 42631437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1545 20 456 C2H2 Transcription Factor Family AT2G01940 56.125 4.31e-154 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu4g1545 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1545 K25871 - gmx:100800187 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3422 2 48946835 48949462 Pvu4g1545 4 42627978 42631437 PCT