Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1527 ATGGCTATTTTTGACAAAGCTGAGTTGCCATTTCTATCAGATAGTCATCCCCAAGTATCAATTGAACTCAATGATTCTAGATTCCCAAGGCATGTATCTAGGACCCGAAGTGTATCAATTTCTATTCCCACTACACTCACAGAGCCATATGAAAGAGATACAAATCGTTTGGGATACACTGGTCCCCTACGGATTCAGAGAATAACTCCATTTAATGAGATGAGTGGTCCATTGCATGCTACTAATAGACCCGAAAACCTTTCTCGGCAGAATAAAGTGGCACCCGAGTCACAAGCAGAAGAAAGTAAGACAGAAAATTTTTCTTCATGCTGTGGCCCCATGGGTGAAAATGATTTGCAGACCAACTATGCTTGCAAGAATGAACATTTAGTTAGGTCCGGTCCACTGGGAATGTGTAGTGATCCATATTGTACAACGTGCCCAACCTACTTCAAGGCTACTCAGCAAAGTAATTCAAATGCTTCGGGTATATTTAATCATGAGTTTCGCAATACTTTTTATGGGGATGCCAAGGATTGGACGAGAAGATTTTTTACTTTCTTGATTCCCAATGTTCCTAGAGTTATGAATCCTCACAATAAACTTGTACAACAATGGAATCAATATTTTGCAATTTGTTGCTGGGTGGCAATTTTTGTGGATCCGTTATTTTTCTTCTTGCTCTCTGTGCAGAAGGAAAAGAAATGTATTGTTATAAACTGGGCTCTTACAAAAGTTCTTGTTGCAGTTAGAAGCATCTATGATTTCATACACTTCCTAAACATTGTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTATGGTGGTTGGTGCTGGGGAGTTAGTCGACCATCCTAAGAAAATAGCTCTTCATTACATCAAGACATCTTTTTTTATTGACTTATTTGTTGTACTTCCTCTTCCTCAGATATTCATATTGTTTGTCCTACCAAAGCACTTAAGGACAGGGTCATCAGGAGCAAACTATGCAAATAACGTTTTGCGTATTGTGATCCTTGTTCAGTATATCCCCAGATTGTGTAGGTTTCTTCCTATGATATTTTCTCCAGATGGATTCGTATTTGAGTCACCTTGGGCAAATTTCTTTATAAATCTTTTTACCTTTATACTATCTGGCCACATTGTTGGGTCCTGGTGGTACTTCTTCAGTTTGCAGAGGGTTAATCAGTGTCTACGAGATGCCTGTGATACCACACATATTACTGGATGCACAAAATTCATTGATTGTGGGCATGGAAAAACTGGAGAATATCAACAAGATAAAAGTTGGTTTAATTGGACGAACAATGCTGTTGCAAGTGCTTGTTTTACTGAAGATGGTTTTCGTGATGGTTATGGTATCTTTCTTAAAGCTGTCAACCTTACCGCACATCCTAATATGTCAACCAGATATTTCTATTCATCATTTTGGGGATTTCAGCAAATTAGTACACTGACTGGGAATTTAACCCCTAGCTATTATGTTCCTGAAGTCCTTTTTACTAAGGCCATTCTTGGGTCAGGACTGTTGCTGTTTGCTCTTCTCATTGGAAACATACAGAACATTCTTCAGGCTCTTGGACGCAGGAAGCTGGAGATGTCACTTAGACGACGTGATGTTGAGCAATGGATGAAGCATAGGCGCTTCGCAGACAATCTAAGAAGGAGAGTGCGACAGGCTGAACGTTTTAACTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTCCTGGAGAATTTGCCAGAAGATCTCCAAAGGGAAATTAGACGTCATCTCTTCACATTTATTAAGAAAGTTCGAATTTTTGCGTTGTTGGATGATCATATCTTGGATGCCATATGTGAGAGGCTAAGACAAAAAACATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGCGAAGATGGAATCAGTGCTCCCCTTTATGAAGGGAGTGTCTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATCCCTTAGCAAGCAAAGGTTACAGAAAAGCAAGAATGCCAAGGCAAAAGTTGGTGAGTAATAGAAGAGTATGTTGCTTAACAAATGTGGAGGCATTTTCCCTCAGAGCAGCAGATCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTAGGAGTCCCCGTGTTCGAGGAGCCATAAGGTTATCCTCTTGTCCTATTTTATGTTTGGCTCTGTGA 2247 0.4014 MAIFDKAELPFLSDSHPQVSIELNDSRFPRHVSRTRSVSISIPTTLTEPYERDTNRLGYTGPLRIQRITPFNEMSGPLHATNRPENLSRQNKVAPESQAEESKTENFSSCCGPMGENDLQTNYACKNEHLVRSGPLGMCSDPYCTTCPTYFKATQQSNSNASGIFNHEFRNTFYGDAKDWTRRFFTFLIPNVPRVMNPHNKLVQQWNQYFAICCWVAIFVDPLFFFLLSVQKEKKCIVINWALTKVLVAVRSIYDFIHFLNIVLQFRLAYVAPESMVVGAGELVDHPKKIALHYIKTSFFIDLFVVLPLPQIFILFVLPKHLRTGSSGANYANNVLRIVILVQYIPRLCRFLPMIFSPDGFVFESPWANFFINLFTFILSGHIVGSWWYFFSLQRVNQCLRDACDTTHITGCTKFIDCGHGKTGEYQQDKSWFNWTNNAVASACFTEDGFRDGYGIFLKAVNLTAHPNMSTRYFYSSFWGFQQISTLTGNLTPSYYVPEVLFTKAILGSGLLLFALLIGNIQNILQALGRRKLEMSLRRRDVEQWMKHRRFADNLRRRVRQAERFNWAATRGVNEEMLLENLPEDLQREIRRHLFTFIKKVRIFALLDDHILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHPLASKGYRKARMPRQKLVSNRRVCCLTNVEAFSLRAADLEEVTGLFARFFRSPRVRGAIRLSSCPILCLAL* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1527 748 ProSiteProfiles cAMP/cGMP binding motif profile. 603 681 IPR000595 -
Pvu4g1527 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 740 - -
Pvu4g1527 748 MobiDBLite consensus disorder prediction 73 109 - -
Pvu4g1527 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 740 - -
Pvu4g1527 748 Gene3D Helix hairpin bin 531 595 - -
Pvu4g1527 748 MobiDBLite consensus disorder prediction 75 109 - -
Pvu4g1527 748 Gene3D Jelly Rolls 601 725 IPR014710 -
Pvu4g1527 748 Gene3D - 207 528 - -
Pvu4g1527 748 SUPERFAMILY cAMP-binding domain-like 531 724 IPR018490 -
Pvu4g1527 748 SMART cnmp_10 603 738 IPR000595 -
Pvu4g1527 748 Pfam Ion transport protein 207 531 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu4g1527 748 CDD CAP_ED 603 719 IPR000595 -
Pvu4g1527 748 SUPERFAMILY Voltage-gated potassium channels 198 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1527 Pvu-Chr4 42438787 42446049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1527 5 683 Ion Channels AT3G17700 58.126 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1527 K05391 - gmx:100795955 1187.94