Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1525 ATGGCTAATTTTGAGAATGACAAGCAGCCTATGCTGTCAGATACTGATGCACAACCATACGATGATCCCTTAGACTCTAAATTCCGAAGGACAGTTACCAGGACTCAAAGTGCTTCAATTTCTATTCCTATGAGTTCCTTGGAGTCATATGAGAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAACACCCTTTATGCATATGAGTGGTCCATTGTATGCTACCACTGGAACTGGAAATCTTTTGCAGAAGCATATTGTATCGGGAAACAAAGCAGATGAAAGAAAGACAGATAGTTTTGCTACTCTCCATGGCTCAAGTTCAGATTACCAAAATAGTGACTATGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCTCAGCAAAGAAATCCAAAACCTTCAACTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTATTTCTTTCTTCTCTTCTTATGTTCCTGGAGTTATGAATCCACACGCTAAAGTTGTACAAAAGTGGAACAAATTTTTGGCCATTTTTTGCTTAATTTCTATTTTTGTGGACCTATTGTTTTTCTTTTGCCTCTATGTGGAGAAGGATAATAAATGCATTCTTATCAACTGGCCATTGACAACAGCACTTGCTTTATTTAGATGCCTGAATGATTTTGTTTATTTCCTTAACATTGTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTTCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATATTATTATTTGTCCTACCAAATTCCTTGGAGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGTGATATTAGTGCAATATTTTCCGAAGTTATTCAGGTTTCTGCCGCTACTAATAGGCCAATCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTTCAGAGGGTTAATCAGTGTTTGCGGAATGCCTGCCATAGTTCTAATATACAAGGATGCATGAGGCTCATTGATTGTGGACATGGCGTAACTGAGTTCATATCAGATCAGTGGATCAACAATACTGATGCTGTTGCTTGTTTGAATTCCTCTCCGGATGGTTTCACTTATGGGATCTATGAGAATGTTGTACCACTTACTATAGAAACTAACATAGTAAAAAAATATGTGTATTCCCTTTTTTGGGGATTCCAGCAAATCAGTACCCTGGCTGGTAATCTAGAACCTAGCTATTTTGAGTGGGAAGTCCTTTTCACTATGGCGATCATAGGATCGGGACTCTTACTTTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAGTTGGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGGCGATTACCCGAAGGTCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCCGCAACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATTTGCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAATTCGGCTTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATCAAAGGAAGTAGAATTCTAAGTCATGGTGGTCTGGTAGAAAAGATGGTATTCGTGGTGCGTGGCAAATTGGAGAGCATTGGAGAAGATGGAACCAGAATGCCTCTATCTGAAGGGGATGCTTGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCTGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGACTAGTTAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATTCTTTTCACAAGATTCTTGCGGAGTCCATGCGTTCAAGGAGCCATAAGATATGAGTCACCTTATTGGAGATCCCTTGCTGCAACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGCTAATTCCTCACCATCAGATTGA 2289 0.4024 MANFENDKQPMLSDTDAQPYDDPLDSKFRRTVTRTQSASISIPMSSLESYEKETSLVGHTGPLQSKRKTPFMHMSGPLYATTGTGNLLQKHIVSGNKADERKTDSFATLHGSSSDYQNSDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKPSTRWDPKFHNALYGDAKSFVRKLISFFSSYVPGVMNPHAKVVQKWNKFLAIFCLISIFVDLLFFFCLYVEKDNKCILINWPLTTALALFRCLNDFVYFLNIVLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIILLFVLPNSLEGANYAKNLLRAVILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHSSNIQGCMRLIDCGHGVTEFISDQWINNTDAVACLNSSPDGFTYGIYENVVPLTIETNIVKKYVYSLFWGFQQISTLAGNLEPSYFEWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEGLRRRVRQAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRLFALMDEPILDAICERLRQKTHIKGSRILSHGGLVEKMVFVVRGKLESIGEDGTRMPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDLEEVTILFTRFLRSPCVQGAIRYESPYWRSLAATRIQVAWRYRKKRLSRANSSPSD* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1525 762 CDD CAP_ED 594 710 IPR000595 -
Pvu4g1525 762 SUPERFAMILY cAMP-binding domain-like 522 714 IPR018490 -
Pvu4g1525 762 Pfam Ion transport protein 206 521 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu4g1525 762 Gene3D Helix hairpin bin 521 586 - -
Pvu4g1525 762 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g1525 762 Gene3D Jelly Rolls 592 716 IPR014710 -
Pvu4g1525 762 ProSiteProfiles cAMP/cGMP binding motif profile. 594 662 IPR000595 -
Pvu4g1525 762 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 5 759 - -
Pvu4g1525 762 Gene3D - 206 519 - -
Pvu4g1525 762 SUPERFAMILY Voltage-gated potassium channels 199 522 - -
Pvu4g1525 762 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1525 Pvu-Chr4 42400031 42411875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1525 5 672 Ion Channels AT3G17700 60.914 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1525 K05391 - gmx:100795427 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1525 4 42400031 42411875 Pvu4g1525 4 42400031 42411875 ECH