Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1524 ATGGCTAATTTTGAAAACGGTGAGCAGCAGAAGATACCAGAAGAAACAGATGCACAACCATATCATGAAACTTTGCATCCTAAATTCCAAAAGATTTTATCCAGGAAACAAAGTGCATCAGTTTCTATTCCCATGGAGTCATATGAGAGAGAAACTAGTCTCGTGGGAGATAGTGGTTCATTATATTCTACACCAGAAATTGATAATCTTATGCAGCATAGTATAGTAGTAACAGGAAACAAAACAGAGGAGATCAAGATAGATGAATTTTCTACTTTCGACAGCACGGTTTCAAAGTACTGGAATAAAAGCTATGATAGCATAAATGAACATTTACTGAGATCTGGGAAACTGGGAGTTTGTAATGATCCTTATTGTACTACTTGTCCTACTTACTTCAAGTCTTCTCAGATAAGAAATCCAAAAGCTTGTAATATACCTGATCCCAAGTTTCAGAATGCTGGTTATGGGGATGCCAAAGGATTCACTAGAAAACTTTTTTCTCTATGTTCATCTTTTGTTCCTGGAGTTATGAATCCTCACTCTAAATTCATACAACAGTGGAACAAGGTTCTTGCCAGTTTTTGCTTGATTGCAATTTTTGTGGATCCATTATTTTTCTTCTTATTCTATGTTCGGCAGGATCATAATTGTATAGTTATCAATTGGAAATTGACAAAAGCACTTGTTATAGTTAGAAGCATGAATGACTTCATATATTTCCTTCACATTCTTCTCCAGTTTAGGTTGGCTTTTGTTTCTCCTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCAAAGAAAATTGCACTTCATTACCTGAAGGGTTATTTTCTTATTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGTTATTGACTGTTCTACCAAAGTCCTTGAGGGAAGCAAACTATGCTAAGAATGTTCTGCGTGCAGCGATCCTAGTGCAGTATATTCCCAGATTATTCAGATTTCTGCCTATGCTGTTTGGTCAATCTCCAGCAGGATTCATATTTGAGTCAGCATGGGCAAATTTCATTATAAATCTTCTCATTTTCATGCTAGCTAGCCATGTTGTTGGCTCTACCTGGTACCTATTCGCTCTACAGAGGGTTAATCAATGTTTTCGAAATGCGTGCCATAGTTCTAATATCCCTGGATGCCTGGCATTCATTGATTGTGGACATAGCCATGTTGGAGACAATCAACTTGGCTTATCATCAAACCAGTGGAACAATCATGCAGATGCTATTGCATGTTGGAATTCCTCTTCCAGTGGCTCTTTTGCTTATGGGATTTATAACAATGCTGTACCTCTTACTACACAAACAAACATGGTCACCAAATACATATATGCTCTATTTTGGGGATTACAGCAAATCAGTACTCTGGCTGGTAACCAAACACCAAGCGATTTTGTGTTTGAAGCCCTTTTTACTATGGCCATCATAGGATTGGGACTTTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGAAATGCAACATAGACGCGGTGATGTTGAGCAATGGATGAGTCATAGGCGCTTGCCAGAATACCTCAGAAGGAGAGTACGAGAGGCTGAACGGTATAGTTGGACTGCAACAAGAGGGGTGAATGAAGCAACACTAATGGAGAATTTTCCAGAAGACCTGCAAGTGGATATAAGACGCCATCTCTTCAAATTTGTTAAGAAAGTTCGAATATTTTCTCTGATGGATGAACCTGTGTTAGACGCCATTTGTGCGAGACTAAGACAAACTACATACATTAAAGGAAGTAGAATTTTGAGTGAAGGTAGTGTGGTAGAGAAGATGGTGTTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACTAGAATTCCTTTATCTGAAGGTGATACTTGTGGTGAAGAACTCTTGACATGGTATCTAGAGCATTCTTCTGTCAGCGCAGATGGCAGAAGAGTAAGGGTTCCAGGACAGAAGTTGCTTAGCAACAGGACAGTAAGATGCTTAACAAATGTGGAAGTACTTTCACTGCGAGCACAAAACCTTGAAGAAGTCACAATCCTTTTTACAAGATTCTTCCGCAGTTTGCGTCTTCAAGGAGCCTTAAGGTATGAATCACCCTATTGGAGATCCCTTGCAGCAATCCGCATTCAAGTTGCATGGAGATACAGAAACAAACGACTAATAAATAAACATTCAGATTCTGAGTTCTTATAG 2262 0.3926 MANFENGEQQKIPEETDAQPYHETLHPKFQKILSRKQSASVSIPMESYERETSLVGDSGSLYSTPEIDNLMQHSIVVTGNKTEEIKIDEFSTFDSTVSKYWNKSYDSINEHLLRSGKLGVCNDPYCTTCPTYFKSSQIRNPKACNIPDPKFQNAGYGDAKGFTRKLFSLCSSFVPGVMNPHSKFIQQWNKVLASFCLIAIFVDPLFFFLFYVRQDHNCIVINWKLTKALVIVRSMNDFIYFLHILLQFRLAFVSPESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLTVLPKSLREANYAKNVLRAAILVQYIPRLFRFLPMLFGQSPAGFIFESAWANFIINLLIFMLASHVVGSTWYLFALQRVNQCFRNACHSSNIPGCLAFIDCGHSHVGDNQLGLSSNQWNNHADAIACWNSSSSGSFAYGIYNNAVPLTTQTNMVTKYIYALFWGLQQISTLAGNQTPSDFVFEALFTMAIIGLGLLLFALLIGNIQNFLQGLGRRRLEMQHRRGDVEQWMSHRRLPEYLRRRVREAERYSWTATRGVNEATLMENFPEDLQVDIRRHLFKFVKKVRIFSLMDEPVLDAICARLRQTTYIKGSRILSEGSVVEKMVFVVRGKLESIGEDGTRIPLSEGDTCGEELLTWYLEHSSVSADGRRVRVPGQKLLSNRTVRCLTNVEVLSLRAQNLEEVTILFTRFFRSLRLQGALRYESPYWRSLAAIRIQVAWRYRNKRLINKHSDSEFL* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1524 753 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 23 747 - -
Pvu4g1524 753 Gene3D Helix hairpin bin 511 576 - -
Pvu4g1524 753 Gene3D Jelly Rolls 582 706 IPR014710 -
Pvu4g1524 753 SUPERFAMILY cAMP-binding domain-like 512 709 IPR018490 -
Pvu4g1524 753 Gene3D - 190 508 - -
Pvu4g1524 753 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 747 - -
Pvu4g1524 753 SMART cnmp_10 584 716 IPR000595 -
Pvu4g1524 753 ProSiteProfiles cAMP/cGMP binding motif profile. 584 652 IPR000595 -
Pvu4g1524 753 SUPERFAMILY Voltage-gated potassium channels 180 513 - -
Pvu4g1524 753 MobiDBLite consensus disorder prediction 1 22 - -
Pvu4g1524 753 Pfam Ion transport protein 190 511 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu4g1524 753 CDD CAP_ED 584 700 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1524 Pvu-Chr4 42389875 42397414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1524 6 662 Ion Channels AT3G17700 55.735 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1524 K05391 - gsj:114390051 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1524 4 42389875 42397414 Pvu4g1524 4 42389875 42397414 ECH