Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1519 ATGGAGATGCAGGATCAAATAGAAAGCACTAGATCAACCATATCTGGCTCAGCTAGTTACTGCCATTCAAATGGTGGAAAACAATCTGAAACTGTTGCTTCTGTTGGAAACAGCCACACTCCCAAGGTTAGGAAACCATACACCATTACTAAACAGAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTTTCTAAGGTTGTTAGGGAATCTGAGGGCAGTGCTGAGAGTTCTGTACAGCCAATTAACATACCTCCTCCTCGACCTAAGAGAAAACCCCTCCATCCATATCCCCGTAAATCACTTGATGCTTTCAAAGGACACACCACACCTAATGAAACAGAAACATCTCAATCCACGAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCGACTTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCTAACCCAAACGTCTGCATGAAGCCCGAGTTTAGTTCCAAGGAAACCGAATATGTTATAGAAGATTCTACCAATATGCCACAAACCACTAGTATTAAGCTTTTCGGAAGAACAGTCTCTATGATAGATAATCAGAAGTTGCAGAACATTGATGATAATGGTAAGGCAATAACTGTGAAGTCTGATGAAGTGGATGATGTTGAGAATGAGAAGCCTGGCCAATCAACCGAGCAAGTAGATACACAATTATCTCTAGGCTTGGTTGGTGGCAACTGTCCCATAACACCTGATTCTGAGGGAGCTGACCGCAGGGACGAGCCACCGAAGGAGAACATGTGCCTCAGTGAATGTGCACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTTCCAGCTTTCTGCGTCACTCCATGCAATCAGATCCTAAATCCCATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACATCGATAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTCAAAAATATCAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAAAGGGTTTGTTCCATATAAAAGATGTTTAGCTGAAAGAGAAGGAAATTCATTAATTGCGGCCATGGAAGAGAGGGATGGGCAACGAGCTCGTGTGTGCTCATAG 1419 0.4426 MEMQDQIESTRSTISGSASYCHSNGGKQSETVASVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSVQPINIPPPRPKRKPLHPYPRKSLDAFKGHTTPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSNPNVCMKPEFSSKETEYVIEDSTNMPQTTSIKLFGRTVSMIDNQKLQNIDDNGKAITVKSDEVDDVENEKPGQSTEQVDTQLSLGLVGGNCPITPDSEGADRRDEPPKENMCLSECAPDASFPQWSLYQGLPAFCVTPCNQILNPMPLRPSLKVRAREEESCCTGSNTESVCDIDNQGKNSDAVDSKCQKYQGEGAAPQKPAKGFVPYKRCLAEREGNSLIAAMEERDGQRARVCS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1519 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 102 IPR017930 -
Pvu4g1519 472 MobiDBLite consensus disorder prediction 206 235 - -
Pvu4g1519 472 MobiDBLite consensus disorder prediction 141 170 - -
Pvu4g1519 472 ProSiteProfiles SANT domain profile. 51 102 IPR017884 -
Pvu4g1519 472 MobiDBLite consensus disorder prediction 1 43 - -
Pvu4g1519 472 PANTHER PROTEIN REVEILLE 7-RELATED 3 459 - -
Pvu4g1519 472 MobiDBLite consensus disorder prediction 324 346 - -
Pvu4g1519 472 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Pvu4g1519 472 MobiDBLite consensus disorder prediction 104 170 - -
Pvu4g1519 472 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 100 IPR006447 GO:0003677
Pvu4g1519 472 Pfam Myb-like DNA-binding domain 53 96 IPR001005 -
Pvu4g1519 472 SMART sant 52 100 IPR001005 -
Pvu4g1519 472 CDD SANT 55 98 IPR001005 -
Pvu4g1519 472 PANTHER SWI/SNF COMPLEX-RELATED 3 459 - -
Pvu4g1519 472 SUPERFAMILY Homeodomain-like 47 101 IPR009057 -
Pvu4g1519 472 Gene3D - 55 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1519 Pvu-Chr4 42276911 42281524 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu4g1519 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1519 - - vun:114181885 867.455