Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1518 ATGGCTAACATGGTCTTTGTTGGTGTTAAGATTGCTGCTGTTCCTCTAGCACCATTACCCATTACAGGCAAAAATCTCACTTCCAGTTTCACCCATAAGAAACACTTACTTCTTCTGAGTTGCTCCCAAACCAATAACAGAACAACCTCTTTCTCCTCTTCCTTCTCATCATCACCCCTCACAAGCAGGGGTGGTTGTTGTGTGTTGGGTTGTCTCCCTCCAGCTTCCTCTGAATCCTCAACGCCATCATCTTCCACTGCTAAGCCCTCTTCCCCTTTCCCTTCAATCAAGCTTTATGTCAGTGGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCACGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAATTGCCAAACCGAGATCAGAGCTACCACAGCGCCACAGGGAAGGCACAAGATTGTAA 567 0.4444 MANMVFVGVKIAAVPLAPLPITGKNLTSSFTHKKHLLLLSCSQTNNRTTSFSSSFSSSPLTSRGGCCVLGCLPPASSESSTPSSSTAKPSSPFPSIKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELPQRHREGTRL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1518 188 PANTHER RNA-BINDING PROTEIN 1 26 182 - -
Pvu4g1518 188 SUPERFAMILY RNA-binding domain, RBD 85 183 IPR035979 GO:0003676
Pvu4g1518 188 SMART rrm1_1 97 170 IPR000504 GO:0003723
Pvu4g1518 188 PANTHER TRANSFORMER-2-RELATED 26 182 - -
Pvu4g1518 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Pvu4g1518 188 Gene3D - 52 184 IPR012677 -
Pvu4g1518 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1518 Pvu-Chr4 42274094 42276847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1518 98 177 Eukaryotic Initiation Factors Gene Family AT4G34110 28.750 8.81e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1518 - - gmx:100305561 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1518 4 42274094 42276847 Pvu4g1518 4 42274094 42276847 ECH