Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1516 ATGTCACCGGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAGCTTGATATCATCCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCAAGTAGAGATCCAGAGTGGTACTTTTTTGGACCCCGGGATAGGAAATACCCAAATGGATTTAGAACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAGAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAAACTTTGGTTTACTATAGAGGCAGAGCACCTCAAGGGATCAGAACTGATTGGGTAATGCATGAATATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAACGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTAATTGAGAGTTGCCAAACCATAATTAATGAGTGTGAAACCATGTCTCCTGACATACCAGGGGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 714 0.416 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTIINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1516 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pvu4g1516 237 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Pvu4g1516 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pvu4g1516 237 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 237 - -
Pvu4g1516 237 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 237 - -
Pvu4g1516 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1516 Pvu-Chr4 42258745 42262588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1516 1 226 NAC Transcription Factor Family AT3G17730 76.763 2.38e-133 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu4g1516 NAM 9.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1516 - - gmx:100784495 496.508