Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1494 ATGAGTGGTAAAGCCTCCGTCTCCAAGGAACTCCATGCCAAGCACACAAAGATATTAGAGGGACTTGTTAAGCTACCCGACAACAGGGAATGTGCAGATTGCGGGACAAAGGCACCGCGATGGGCAAGTGTGAACTTAGGAATTTTCATATGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTACATATATCAAAGGTGCGATCCACAACTTTGGATACCTGGTTGCCCGATCAAGTTTCTTTTATGCAATTAATGGGTAATGCAAGGTCAAATAAGCACTGGGAGGCAAACTTACCACCAAATTTTGACAGAAATGGTTGTGGAATCGAGAGATTTATTCGTTTGAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGAGAACTTCTACCAACTTCAAAGTCAGCTGAAATAATCTTTAATTCCAATGAGTCACCTGCTGCTGGGGCCAAGACTGTTATTCAGAAGAATAGGAGATTGTCTCTTGAAGAAAGCATTCTTGTGAAACATATGAAACATGTTCCGCCTCCGGTAACAAGATCTCAGGAGCGGCCCTCTGTTCTTCAAAAGAAGGTTTCACCTCCAATAGTAAGGAGGCCGTCTGCATCCCTTGATTTTGACAGCTCCAGGTCGAATAACAATGGTACTGTCGATCATTTTGGCCTCTTTACGATCCATGATGCTAAACAGGAAGTCTCAACTACACCTCCTAGTTGGATAACGTTCGATTGA 735 0.434 MSGKASVSKELHAKHTKILEGLVKLPDNRECADCGTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLMGNARSNKHWEANLPPNFDRNGCGIERFIRLKYVEKRWASKGELLPTSKSAEIIFNSNESPAAGAKTVIQKNRRLSLEESILVKHMKHVPPPVTRSQERPSVLQKKVSPPIVRRPSASLDFDSSRSNNNGTVDHFGLFTIHDAKQEVSTTPPSWITFD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1494 244 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Pvu4g1494 244 SMART arf_gap_3 5 129 IPR001164 GO:0005096
Pvu4g1494 244 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Pvu4g1494 244 CDD ArfGap 19 119 - -
Pvu4g1494 244 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Pvu4g1494 244 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Pvu4g1494 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Pvu4g1494 244 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 244 - -
Pvu4g1494 244 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Pvu4g1494 244 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Pvu4g1494 244 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1494 Pvu-Chr4 41982920 41986827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1494 22 119 C2H2 Transcription Factor Family AT4G05330 52.885 5.60e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1494 K12486 - gmx:100802691 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1494 4 41982920 41986827 Pvu4g1494 4 41982920 41986827 ECH
Pvu2g3432 2 49011859 49016470 Pvu4g1494 4 41982920 41986827 PCT