Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1489 ATGGCAACTCCAAGTTCCCATGGATTCACATATGATGTGTTCCTGAGCTTTAGAGGGGAAGACACGCGTTATGCTTTCACTGCCAATCTCTTCAAAGCTCTTAGTGACAAGGGAATTCACAGTTTCTTTGATGATGACAAACTTGAAAGCGGAGAAGAAATAACAGCAACACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATAGTTGTCCTCTCTCACAACTATGCTTCTTCCTCCTTTTGCTTGGATGAACTCGCTACCATCCTTCACTGCAAGACTAAAGGCCTCTTGGTTATACCCGTCTTTTATAAGGTAGATCCTTCTCATGTAAGACACCAGAAAGGTAGCTATGAAGAAGCACTGGCTAAGCTTCAAAAGAGGTTCAAAGCTAAGAAGGAGAAGCTGCAGAAATGGAAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTGTCACTTCCAAGACGGTGATGGATACGAATACAAGTTTATTGGGAATATTGTGGACTCGGTCTGCGACAAGATTAATCCTTGTCGTTTACATGTTGCGGATTACCCAGTTGGACTAGGGCCGCAAGTGCTACAACTAAGGAAGCTTCTGAATGTTGAATCTGGTGATGGATTCCACATGATAGCTATCCATGGAATGGGAGGGATAGGAAAAACAACACTCGCTCTAGCAGTTTATAATTTCATTGCTGTCTGTTTTGATGCTTCTTGTTTTCTTCAAAACGTGAGAGAGAAATCAAACAAACATGGGCTAGAACACCTCCAAAGCATCCTTCTTTCAAAAATACTTGGAGTGAAGGACATCAACTTAGCAAGTGAGCATGAAGGAATTTCAGTGATACAACAAAGGTTGAAGCGAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAAGTGCGAGCAGTTACAGGCACTGGCAGGAAGCCCTGATTGGTTTGGTCCCGGCAGCAGGGTCATCATCACAACTCGAGATACACAACCGCTGGCATCTCATCAGGTGAAAAGAGCATATAAGGTCAAGACATTGAACAGAAAGGATGCTCTTCAGTTGCTCACGTGGAAAGCTTTCAAAACGGAACAAGTTGATCCAAGTTATGTGGAGGTCTTGAATCGTGTAGCAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATTGGTTCCAACCTGTTTGAAAAAAGTGTGGAACAATGGAAATCTGCTATCAATCAATATAAAAGAATTCCCAATAGTCAAATTCTAGAAAAACTTAAAGTAAGTTTTAAGGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAATTGACAGAGGTTGAAATTATGCTTCGTGCTCTTTATGATGACTGCATGAAACATCATATCGAAGTGTTGGTTGAAAGATCTCTCATAAAGATAAATCAGGATGGAACAGTTAAATTGCACAACTTGATTGAGGAAATGGGCAAACAAATTGACCAGCAAGAATCACTGAAAGAGCCAGGGAAGCGCAGGAGATTATGGTCACCTAAAGATATAATTCAAGTTCTAAAACACAACAAGGGAACTAGTGAAATTGAAAGGGTGTGTCTGGATCTCTTCACATCAGACAAAAGAGAAATGGTGGAATGGAATGGAAAGGCCTTGGAGGACATGGAAAACCTCAAAATTCTTATTATTAGACATTGTAAATTTTCCCAAGGTCCCAGTTATTTTCCTGAAAGTTTGAAAGTACTGGAATGGTACCAATATCCTTCAAATTGTTTACCATCTACTTTTCATCCCAACAAACTTCTCATATGCAAGTTACCTTACAGTTGCTTTACCTCATTCGGGTTGCTTGGCTCATCAAAGAAGTTCGAGAAGCTAACCATCTTGAATTTTGACAACTGCAAACTTTTAACACGGATACCTGACGTATCTGAGCTTCCAAATTTGGAGAAACTTTCATTTAAAGAGTGTGAGAGTTTAATCGAAGTGCACGACTCAGTTGGTTTTCTGACTAACCTTAAAATATTAAGTGCTGAAGGATGCAAGAAGCTTTGGAGATTTCCACCTCTCAGCTTGGCCTCTCTTGAAATTCTTGAACTTTCCTTTTGTTTCAGTCTTGAGAATTTTCCGGAAATGTTAGGAAAGATGGGACACATAAGGAAACTTAGTCTGCTTAAACTTCCTATAAAAGAATTGCCAGTTTCATTTCAAAATCTTACTGGACTCCATCAGTTATACGTGGACTGTGATTTTGTTCAGTTAAGTAGCATTGTCTTGACGCCTGAACTGTCTGAGCTTATAGTTTATAATTGCAAGGAGTGGAAATGCGTAAAATCTAAAGAGGGTGAAGAAGAAGTGGGCTCAACGGTATCTTCAAATGTAGAATCGTTTTGGTCTTATTCTTACAACCTGGATGATGATTTTTTTTCAAAAGGTTTCACGCAGTTGGCTCAAGTGAGACAAATGTGGCTAGAGAAAAGTAATTTCACATTCCTTCCTGAATGCCTCCGAGAATTTCACAACATGTATGCTCTTGACGTGAGTGATTGCAAACTTCTTGAGGAAATCAGAGGGATTCCACCAAACTTAAAACATTTCAGGGCAATAAACTGTGTATCATTGACTTCCTCAGGTTCCAGCATGCTGTTAAATCAGCAACTTCACGAGGCTGGAGGGACAGTGTTTGTCTTTCCAGGAGGAAGTATTCCAGCATGGTTGGATAAACAAAGCAAGGGACCTTCAATCTCTTTCTGGTTTCGAAATAAATTCCCTGCAAAAGTTCTTTGTCTTCTTATTGCACCTGTACTGGATGATGTCACTTCAGGATTAGTTAGACCCATGGTGTTAATCAACGGCAAAGTTCAAGAATATCGTTTTCATCGTAAAAAGGGAGGAGTGAAGATGGTGGAATTGGATCATATACACCTCTTTGATCTACGACAGTTACATTTCCATGATGATCTGATGGAAATGGCTTTAGAAAAGGAGTGGAAGCATGTGGAGGTTACGTATGAAGGTTTGTTTGATACCTCACTCATCAAAGCAATGGGAATGCATGCAGTGAAAGAGGAAAGCATGAGCATGGAGGACATTCGATATGATGATCCTTACACCATCACAAAAGTGTGGCCATGCAAGTTTTTAGTAGTTTTTCTTCTTTTCTTTTCTCACCTTTTGTTTGCTCTTATTTTATTTACAACTCTCATGAGTGGCTAG 3222 0.4007 MATPSSHGFTYDVFLSFRGEDTRYAFTANLFKALSDKGIHSFFDDDKLESGEEITATLVKAIEESRIAIVVLSHNYASSSFCLDELATILHCKTKGLLVIPVFYKVDPSHVRHQKGSYEEALAKLQKRFKAKKEKLQKWKMALRQVADLSGCHFQDGDGYEYKFIGNIVDSVCDKINPCRLHVADYPVGLGPQVLQLRKLLNVESGDGFHMIAIHGMGGIGKTTLALAVYNFIAVCFDASCFLQNVREKSNKHGLEHLQSILLSKILGVKDINLASEHEGISVIQQRLKRKKVLLILDDVDKCEQLQALAGSPDWFGPGSRVIITTRDTQPLASHQVKRAYKVKTLNRKDALQLLTWKAFKTEQVDPSYVEVLNRVATYASGLPLALEVIGSNLFEKSVEQWKSAINQYKRIPNSQILEKLKVSFKALEEEEKSVFLDIACCFKGYKLTEVEIMLRALYDDCMKHHIEVLVERSLIKINQDGTVKLHNLIEEMGKQIDQQESLKEPGKRRRLWSPKDIIQVLKHNKGTSEIERVCLDLFTSDKREMVEWNGKALEDMENLKILIIRHCKFSQGPSYFPESLKVLEWYQYPSNCLPSTFHPNKLLICKLPYSCFTSFGLLGSSKKFEKLTILNFDNCKLLTRIPDVSELPNLEKLSFKECESLIEVHDSVGFLTNLKILSAEGCKKLWRFPPLSLASLEILELSFCFSLENFPEMLGKMGHIRKLSLLKLPIKELPVSFQNLTGLHQLYVDCDFVQLSSIVLTPELSELIVYNCKEWKCVKSKEGEEEVGSTVSSNVESFWSYSYNLDDDFFSKGFTQLAQVRQMWLEKSNFTFLPECLREFHNMYALDVSDCKLLEEIRGIPPNLKHFRAINCVSLTSSGSSMLLNQQLHEAGGTVFVFPGGSIPAWLDKQSKGPSISFWFRNKFPAKVLCLLIAPVLDDVTSGLVRPMVLINGKVQEYRFHRKKGGVKMVELDHIHLFDLRQLHFHDDLMEMALEKEWKHVEVTYEGLFDTSLIKAMGMHAVKEESMSMEDIRYDDPYTITKVWPCKFLVVFLLFFSHLLFALILFTTLMSG* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1489 1073 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Pvu4g1489 1073 PRINTS Disease resistance protein signature 211 226 - -
Pvu4g1489 1073 PRINTS Disease resistance protein signature 287 301 - -
Pvu4g1489 1073 PRINTS Disease resistance protein signature 380 394 - -
Pvu4g1489 1073 PRINTS Disease resistance protein signature 692 708 - -
Pvu4g1489 1073 Pfam TIR domain 11 172 IPR000157 GO:0007165
Pvu4g1489 1073 SUPERFAMILY "Winged helix" DNA-binding domain 416 523 IPR036390 -
Pvu4g1489 1073 Pfam NB-ARC domain 204 411 IPR002182 GO:0043531
Pvu4g1489 1073 Gene3D - 345 429 IPR042197 -
Pvu4g1489 1073 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Pvu4g1489 1073 Gene3D Ribonuclease Inhibitor 706 891 IPR032675 -
Pvu4g1489 1073 SUPERFAMILY L domain-like 549 882 - -
Pvu4g1489 1073 Gene3D - 5 184 IPR035897 -
Pvu4g1489 1073 Coils Coil 115 142 - -
Pvu4g1489 1073 Gene3D - 188 340 IPR027417 -
Pvu4g1489 1073 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 911 - -
Pvu4g1489 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 439 IPR027417 -
Pvu4g1489 1073 Gene3D Ribonuclease Inhibitor 536 689 IPR032675 -
Pvu4g1489 1073 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 911 IPR044974 GO:0006952
Pvu4g1489 1073 SMART till_3 10 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1489 Pvu-Chr4 41940208 41944194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1489 11 747 WRKY Transcription Factor Family AT4G12020 28.927 4.81e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1489 - - var:108344036 1373.61