Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1487 ATGCCAACCCCTTCTCTAAAGGCTGCATCCACCTATGATGTGTTCCTCAGCTTCAGCTGGGACACACGCAATGGTTTTGCTGGCCATCTCTACAAAGCTCTTGCTCGTAGAAAAATCCACACTTTCATTGATAACATGGAGCTTCCAAAAGGATACCCAATCATAACAACACTTCTCAAGGCAATTCAAGGCTCCAGAATTGCCATCGTTGTGCTCTCTCACTACTATGCTACTTCTTACTACTGCTTAGAGGAACTTGCAACCATGCTTCACTGCCGGACAAAAGGGTTGTTGGTTATACCGGTCTTCTATAAGGTTCGCCCTTCTGATGTCCGAAACCAGAAAGGTAGTTATGAAAAAGCATTGTCTAAGCTTCAAGAAAGGTTCAGAGATGAGGAGAAGTTGCAGAAATGGAAGATGGCTCTGTGTCAAGTAGCTAACTTGTCTGGCTATCATTTCGAAGACGGGGTTGGATATGAACACAAGTTTATTGAGAGAATTGTTGAGCATGTCTATCACAAGATTACTCGTCCTTCTTTTGTACATTTTGTGGATTACCCAGTTGGACTATATTCACAAGTACTAGAAGTAAGGAAGCTTTTGGATTGTGGATCAGAGGATGGTGTTCACATGATAGGAATCCATGGGATGGGTGGGGTAGGAAAATCAACACTTGCTCGAGCTGTCTACAATGATTTAATTGCTGAGAATTTTGATGGTTTGTGTTTTCTTGAAAACGTGAGAGAAAAAGCAAACAAACATGGGTTGGAACACCTCCAAAGCATCCTTCTATCACAAATATTAGGAGAGAAGGACATCAACTTAACAAGTAAGAAACAAGGAATTTCAATGATAAAGAACAGTCTGAATGGGAAGAAGGTTCTCCTGATTCTGGATGATGTTGACAAGCTCGACCAATTAGAAGCAGTTGGTGGAGGACGTGACTGGTTTGGTCCTGGCAGCATAATCATGGTCACAACTCGGGACAAGCAATTGTTGACAACTCATCAAGTTACAATAACATATGAGGTGAAGGGATTGAATGACAATGATGCTCTTCGGCTGCTTAAATGGAAAGCTTTCAGAAAGGAAAAGGCTGATCCAGATTATGAATTAGCCTTGAATCGATGGGAGACCGCTATCAAACAATATGAAAGGATTCCCAAGAGGGAAATCCTAAATATACTTAAAGTAAGCTTTGATGCTTTGGAAGAAGAAGAGAAGACTATTTTTCTTGATATTGCTTTTGGACTGGAGTCATGTTCAGAAGCATTCAGCTACGATGTGTTCCTCAGCTTCAGAGGCTCAGACACACGCTATGGTTTTACGGGCTATCTGTACAAAGCTCTTCATGACAGTGGAATCCACACTTTCATTGATGATGAAAACCTTAAGAGAGGAGAGCAAATTACACCAACAATTGTGAAAGCAATTGAAGAGTCCAGGATTGCTATCACTGTGCTTTCTGTAAACTATGCTTCTTCCACCTGTTGCTTAGATGAACTTGCAACCATCCTTCACTACCTTAAGAGAAAAAAACTGCTGGTTTTACCAGTCTTTTATTATGTAGATCCTACTCAGGTGCAATTGCAGAAAGGAAGTTTTGGAGAAGCCTTCACTAAACATGAGGAGAGGCTCAAGCATAACATGAAAAAGTTGATGAAATGGAAGATGGCTCTGCATCAAGTAGCTAACTTGTTTAGATTTCATATCGAACATGGGGCTAGATTTGAATATGAGTTTATTGAGGAGATTGTGGATTGGGTCTCCAGAAAGATTAATCCTGCTCATTACCCAGTTGGACTAGGGTCACAAGTGCTAGAAGTAATGGAACTTTTGGATGTTGGATGTGATGGTGGTGTCCACATGATAGGGATTCATGGAGTTGGCGGGGTAGGGAAATCAACACTTGCTCAAGAAGTTTATAATAATTTGATTGCTGACAAGTTTGATGGTTCATGTTTTGTTGAAAATGTGAGAGAAAAATCAAACAAGCATGGTTTACAATACCTCCAAAGCATCCTTCTTTCGAAAATACTTGGAGAGAAGGACATCAAGTTAACAAGTGTGCAACAAGGAACTTCAATGATACAACGTAGGCTCCAGCAAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAGACAGGAGCAATTGCAGGCAGTTGTTGGAAGAGCTGATTGGTTTGGTCCTGGAAGCAGAATCGTAATCACAACACGAGATGAACAACTGCTAGCCTCCTATGATGTTCAAAGAACTTATGAGGTGAAGAAATTAAATAAGAATGATGCTCTTGGATTGCTTAAATGGAAAGCTTTTAAAATGCATTACTATGATCAAAGGTATGAGGAGCTCTTGAATCATGCAGTAACATTTGCTTCTGGCATTCCGTTAGCTTTGGAAGTAATAGGTTCCAACTTGTATGGAAAAAGTGTAGAAGAATGGAAAACTGTCATCCATCAATTTGAAAAATGTCCTAACAGTCCAGTCCAAGCGATACTTAAAGCAAGCTTTGATTCTTTGGAGGAAAAAGAAAGGAGTGTTTTTCTTGACATTGCTTCTTGCTTCAAAGGATATGAATTGGCAGAGGTTGAAGATATACTTCAAGCTCATTATGGTCAGAACATGAAGTGTTACATTGATGCATTGGTTGAAAAATCTCTAGTAAAGCTTAGTCATGGTACAAAACCTTGTTATAATAGAGTTACATTGCATGACTTGATTGAGGATATGGCTAAAGATATTGTCCGACAGAAATCACTGATAGAGCCAGGTGAGTGTAGGAGATTATGGTTACTGGAAGATGTAAGAGAAGTTTTAAAACACAACAGGGGAACTAGCAAAATTGAAATGATATGTCTGGATTTCCCAATATTTGATCAAGAAGAAATAGTAGAATGGGATGGAAAGGCCTTCCAGAATATGCAAAACCTCAAAACACTCATTATTAGAAATGGTAACTTTTCCAAAGGTCCAGAATATCTCCCAGATAATTTGAGAGTGCTTGAATGGTGGAGATATCCCTCAAATTGTTTACCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTAGTATTTCCACAACTGAGTTGACAAACTTAATGAAGGCAAATTATTCATTCAAATTTTGTTTTCTTTGCAGAAGTTGGTGA 3168 0.3939 MPTPSLKAASTYDVFLSFSWDTRNGFAGHLYKALARRKIHTFIDNMELPKGYPIITTLLKAIQGSRIAIVVLSHYYATSYYCLEELATMLHCRTKGLLVIPVFYKVRPSDVRNQKGSYEKALSKLQERFRDEEKLQKWKMALCQVANLSGYHFEDGVGYEHKFIERIVEHVYHKITRPSFVHFVDYPVGLYSQVLEVRKLLDCGSEDGVHMIGIHGMGGVGKSTLARAVYNDLIAENFDGLCFLENVREKANKHGLEHLQSILLSQILGEKDINLTSKKQGISMIKNSLNGKKVLLILDDVDKLDQLEAVGGGRDWFGPGSIIMVTTRDKQLLTTHQVTITYEVKGLNDNDALRLLKWKAFRKEKADPDYELALNRWETAIKQYERIPKREILNILKVSFDALEEEEKTIFLDIAFGLESCSEAFSYDVFLSFRGSDTRYGFTGYLYKALHDSGIHTFIDDENLKRGEQITPTIVKAIEESRIAITVLSVNYASSTCCLDELATILHYLKRKKLLVLPVFYYVDPTQVQLQKGSFGEAFTKHEERLKHNMKKLMKWKMALHQVANLFRFHIEHGARFEYEFIEEIVDWVSRKINPAHYPVGLGSQVLEVMELLDVGCDGGVHMIGIHGVGGVGKSTLAQEVYNNLIADKFDGSCFVENVREKSNKHGLQYLQSILLSKILGEKDIKLTSVQQGTSMIQRRLQQKKVLLILDDVDRQEQLQAVVGRADWFGPGSRIVITTRDEQLLASYDVQRTYEVKKLNKNDALGLLKWKAFKMHYYDQRYEELLNHAVTFASGIPLALEVIGSNLYGKSVEEWKTVIHQFEKCPNSPVQAILKASFDSLEEKERSVFLDIASCFKGYELAEVEDILQAHYGQNMKCYIDALVEKSLVKLSHGTKPCYNRVTLHDLIEDMAKDIVRQKSLIEPGECRRLWLLEDVREVLKHNRGTSKIEMICLDFPIFDQEEIVEWDGKAFQNMQNLKTLIIRNGNFSKGPEYLPDNLRVLEWWRYPSNCLPSDFHPKELAICKLPCSSISTTELTNLMKANYSFKFCFLCRSW* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1487 1055 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 375 420 - -
Pvu4g1487 1055 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 18 368 - -
Pvu4g1487 1055 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 429 1049 - -
Pvu4g1487 1055 ProSiteProfiles TIR domain profile. 425 593 IPR000157 GO:0007165
Pvu4g1487 1055 SUPERFAMILY "Winged helix" DNA-binding domain 829 941 IPR036390 -
Pvu4g1487 1055 Gene3D - 593 753 IPR027417 -
Pvu4g1487 1055 Gene3D - 180 341 IPR027417 -
Pvu4g1487 1055 PRINTS Disease resistance protein signature 623 638 - -
Pvu4g1487 1055 PRINTS Disease resistance protein signature 700 714 - -
Pvu4g1487 1055 PRINTS Disease resistance protein signature 793 807 - -
Pvu4g1487 1055 PRINTS Disease resistance protein signature 973 989 - -
Pvu4g1487 1055 Pfam TIR domain 12 174 IPR000157 GO:0007165
Pvu4g1487 1055 Pfam TIR domain 427 594 IPR000157 GO:0007165
Pvu4g1487 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 414 IPR027417 -
Pvu4g1487 1055 CDD AAA 214 329 - -
Pvu4g1487 1055 Pfam NB-ARC domain 197 367 IPR002182 GO:0043531
Pvu4g1487 1055 Pfam NB-ARC domain 606 841 IPR002182 GO:0043531
Pvu4g1487 1055 SUPERFAMILY Toll/Interleukin receptor TIR domain 422 566 IPR035897 -
Pvu4g1487 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 852 IPR027417 -
Pvu4g1487 1055 SMART AAA_5 208 343 IPR003593 -
Pvu4g1487 1055 SMART AAA_5 620 759 IPR003593 -
Pvu4g1487 1055 SMART till_3 11 148 IPR000157 GO:0007165
Pvu4g1487 1055 SMART till_3 426 566 IPR000157 GO:0007165
Pvu4g1487 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 368 IPR044974 GO:0006952
Pvu4g1487 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 429 1049 IPR044974 GO:0006952
Pvu4g1487 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 375 420 IPR044974 GO:0006952
Pvu4g1487 1055 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 151 IPR035897 -
Pvu4g1487 1055 Gene3D - 758 842 IPR042197 -
Pvu4g1487 1055 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Pvu4g1487 1055 Gene3D - 420 592 IPR035897 -
Pvu4g1487 1055 Gene3D - 9 179 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1487 Pvu-Chr4 41925671 41932955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1487 2 460 WRKY Transcription Factor Family AT4G12020 25.311 2.77e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1487 - - pvu:PHAVU_004G140500g 2088.92