Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1486 ATGGCTGTAACATCACCTTCCCAAGCAATCTACGATGTGTTCCTCAATTTCAGAGGCCCAGACACACGTCAAGGTTTTACTGGGTATCTCCACAAAGCACTTCGTGACAGTGGAATCCACGTTTTCATTGATGATGAGGGCATTCAGAGTGGACAGATAATAACACCAACACTTAAGGAGGCAATTGAAAACTCCAGGATTGCCATCACTGTGCACTCTACAAACTATGCTTCTTCTTCCTTCTGTTTGGATGAACTTGCAACCATTCTTGACTGCTCCAAAAGGACTGGACTGTTGGTCTTGCCTGTCTTTTACAAGGTCTCTCCTTGTCATGTCAGACACCAGCATGGAAGTTATGGAGAAGCATTGCTTAGACTTGAGAAAAGGCTTCTTGAGGAAAGGCTCCACCATAACATGGAGAATTGGAAGATGGCTCTGACAGAAGTAGCTGACTGTTCTGGCTTTCATTTCGAAGATGGAAAAGAATATGAGCACAAGCTCATTGAGAAGATTGTTGAGCGTGTCTTCAACTTGCTTAGCAATGGCGAAGAAAGATTGCATGTTGCGGATTACCCAGTAGGACTAGGGTCACAGGTGCTAGAAATAAGGAAGCTTTTGGATGTTGGATGTGATGATGGTGTCCGCATGATAGGGATCCATGGAATGGGCGGTGTAGGGAAATCAACACTTGCTCGCGCAGTTTATAATTTGATTAGTGATCAATTTGATGGTTCGTGCTTTCTTCAAAATGTAAGGGAAGAATCAAACAAACATGGGTTAAAACACCTTCAAAGCATCATTCTTTCACAGTTACTTGGAAGGAAGGAAACCAACTTAGCAAGTGAGCAACAAGGAATTTCAATAATAAAAAACAGGTTCAATCGAAAGAAAGTTCTCTTAATTCTTGATGATGTAGACCAGCACAAGCAGCTGCAGGGAACTGTTGGAAGTCCTGATTGGTTTGGTCCCGGCAGCAGAGTGATCATCACCACTCGCGACAAACAACTTCTAGCATTTCATGAGGTTAAAAGAACACATGAGGTGAAGGAATTGAATAAGAAAGATGCTCTTAAGTTGCTTAAGTTGAAAGCTTTTAAAACTGAGGAAGTTGATCCAAGTTACATGGAGGTATTGAATCAGGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTGGAAGTAATAGGCTCCAACTTGTTTGGAAAAAGTGTACGAGAATGGGAATCTGCTATCAGACAATATAAGAGAATTCCTAATAATCAAATCCTAGAGATACTTAGAGTAAGCTTTGATGCTTTGGGAGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATTGTCAGAGGTTGAAGAGAAACTTCGTGCTCTTTATGATAACTGCATGAAATACCATATTGGGGTGTTAGTTGAAAACTCTCTCATAAAGATTACTCATGATGATAGAGTTACATTTCATGATTTGATTGAGGACATAGGTAAAAAAATTGACCGTCAGCAATCACCACCAGAGCCAGGGAAGCGCAGGAGATTATGGTTACAAGAAGATATAATTCAAGTTTTAAAGCACAACTCGGGAACTAGTGAAATCAAAATTATCTGTCTGGATTTCCCCATATCCGACAACCAAGAAGTAGTAGAATGGGATGAAAACGCTTTCATGGTGATGAAAAGCCTTAAAATACTTATTGTTAGAAATGGTAACTTTTCCCCATATCCAAATTATCTACCTGAAAGTTTGAGT 1761 0.4015 MAVTSPSQAIYDVFLNFRGPDTRQGFTGYLHKALRDSGIHVFIDDEGIQSGQIITPTLKEAIENSRIAITVHSTNYASSSFCLDELATILDCSKRTGLLVLPVFYKVSPCHVRHQHGSYGEALLRLEKRLLEERLHHNMENWKMALTEVADCSGFHFEDGKEYEHKLIEKIVERVFNLLSNGEERLHVADYPVGLGSQVLEIRKLLDVGCDDGVRMIGIHGMGGVGKSTLARAVYNLISDQFDGSCFLQNVREESNKHGLKHLQSIILSQLLGRKETNLASEQQGISIIKNRFNRKKVLLILDDVDQHKQLQGTVGSPDWFGPGSRVIITTRDKQLLAFHEVKRTHEVKELNKKDALKLLKLKAFKTEEVDPSYMEVLNQVVTYASGLPLALEVIGSNLFGKSVREWESAIRQYKRIPNNQILEILRVSFDALGEEEKSVFLDIACCFKGYKLSEVEEKLRALYDNCMKYHIGVLVENSLIKITHDDRVTFHDLIEDIGKKIDRQQSPPEPGKRRRLWLQEDIIQVLKHNSGTSEIKIICLDFPISDNQEVVEWDENAFMVMKSLKILIVRNGNFSPYPNYLPESLS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1486 587 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 586 IPR044974 GO:0006952
Pvu4g1486 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 444 IPR027417 -
Pvu4g1486 587 Pfam TIR domain 11 180 IPR000157 GO:0007165
Pvu4g1486 587 Gene3D - 5 185 IPR035897 -
Pvu4g1486 587 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 586 - -
Pvu4g1486 587 Gene3D - 187 346 IPR027417 -
Pvu4g1486 587 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 155 IPR035897 -
Pvu4g1486 587 Gene3D - 350 434 IPR042197 -
Pvu4g1486 587 Pfam NB-ARC domain 201 415 IPR002182 GO:0043531
Pvu4g1486 587 SMART till_3 10 152 IPR000157 GO:0007165
Pvu4g1486 587 SMART AAA_5 213 355 IPR003593 -
Pvu4g1486 587 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
Pvu4g1486 587 ProSiteProfiles TIR domain profile. 9 179 IPR000157 GO:0007165
Pvu4g1486 587 PRINTS Disease resistance protein signature 216 231 - -
Pvu4g1486 587 PRINTS Disease resistance protein signature 292 306 - -
Pvu4g1486 587 PRINTS Disease resistance protein signature 385 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1486 Pvu-Chr4 41920838 41922907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1486 193 518 WRKY Transcription Factor Family AT5G45050 35.455 6.33e-54 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1486 - - gmx:106794133 755.747