LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g1483	ATGGCAACTACAACTTCCCATGGATTCACCTATGATGTGTTCTTGAGCTTTAGAGGGGAAGACACGCGTTATGCTTTCACTGCCAATCTCTTCAAAGCTCTTGATGACAAGGGAATTCACAGTTTCTTTGATGATGACAAACTTGAAAGCGGAGAAGAAATAACAGCAACACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATAGTTGTGCTCTCTCCCAACTATGCTTCTTCCTCCTTTTGCTTGGATGAACTCGCTACCATCCTTCACTGCAAGACTAAAGGGTTGTTTGTTATACCCGTGTTTTATAAGGTGGATCCTTCTCATGTAAGACATCAGAAAGGTAGCTATGGAGAAGCATTGGCTGAGCATCAAAAGAGGTTCAAAGATAAGAAGGAGAAGCTGCAGAAATGGAAGGTGGCTCTGCGTCAAGTTGCTGACTTATCTGGCTATCATTTTAAAGATGGAGATGAATACCAATACAACTTTATTGGGAGAATTGTTGAACGGGTTTCTAGGGAGATTAATCGTGCTCCTTTACATGTTGCGGATCACCCAGTTGGCCTACTGTCACAAGTGCTGAAAGTGAAGAAACTTTTGGATGTTGGATCTAATGATGTTGTCCACATTATAGGGATCCATGGAATGGGAGGGATAGGAAAAACAACACTTGCTCTAGAAGCGTATAATTTGATTGTTGATGATTTTGATGGTTCATGTTTTCTTCAAAATGTTAGAGTTGAATCAAATAAACATGGGTTAAAACACCTCCAGGCCCTCATTCTTTCCGAAATACTTGGAGAGAAGAACATCAACTTAGCAAGTGTGCAACGAGGAATTTCAATGATACAACAAAGGCTCCGTAGGAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACCGAAAGCAGTTACAAGCATTTGCTGGAAGATCCGATTGGTTTGGTCCCGGCAGCAGAGTTATCGTTACCACTCGGGACGAACAACTGCTAAAATCTCATAAGGTTGAAAGAACTTATGAGGTGGAGGAATTGAACAAGTATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGAGCAAATTTTGATCCAAGTTACGAGGACGTCTTGAAACGTGTAGTGACTTATGCTTCTGGTCTCCCATTGGCTTTAGAAGTAATAGGTTCCAACTTAGTTGGAAAAAGTGTGGAGGAATGGGAGTCTGCTATTGAACATTATAAAAGAATTCCTAATGGTGAAATTCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGAGAAGAAGAAAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGAAGTAATCTGACAGAAGTTGAACATATACTTGGTGTTCTTTATGATAACAACATGAAACATCATATTGGTGTGTTGGTAGAAAAATCTCTCATAAAGGTTAAGGTTTGGCGTAGTGTAGTTGAAATGCACGACTTGATTGAGGACATGGGTAGGCAAATTGACCAGCAAAAGTCACCCAAAGAGCCAGGGAAACACAGGAGATTATGGTTACCTAAAGATATCATTCATGTTTTAAAACACAACACGGGAACTAGCAGAATTAAAATCATATGTCTAGATTTGTCTATAAGGGAGAAAGAAGAAACACTAGAATGGAATGCAAACGCCTTTAAAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAGTTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGTGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTCTTCCAAATAACCTTGTCATTTGCAAGTTAACTGACAGCAGCCTTGTGTCATTTGGGTTCCATGGCTCGTTGAAGGCAAGTTTAAAGAGTAAGTTCGAGAATCTAACTGTCTTGAATTTTGACCAGTGCAAATATTTAACACAGATACCTGATATGTCTGATCTCCCAAATTTGGAGGAAGTTTCATTTAAAAAGTGTGGGAGTTTAATTGCAGTTCACGACTCGATTGGTTTTATGACTAAACTGAAAATATTGAATGCAGAAGGTTGCATCAAGCTTATGAGTTTTCCGCCTCTCAACTTGCCCACTCTTGAAAGTTTAAAACTTTCATATTGTTCGAATCTAGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAGGGTACTTCAATTGGAAGAGCTTCCCATAAAAGAATTGCCAGTTTCGTTTCAAAATCTTATTCGACTCAGAGACTTGATCTTGTCATGTGAAATTGTTCACTTACCAAGTAGCATTGTCATGATGCCTGAGTTGTTGGATATTTGTGTTACTAATTGCAAGGAGTGGCAATGGTTAAAATCAGATGAGGGTGAAGATAATATAGGCTCAATGGTTTCTTCAAAGGTAGATTGGTTTTTTGCCTCGTCTTGCAACCTTGATGATCAATTCTTCTCGGCAGGTTTCATGCAGTTGGCACAAGTGCGTAGTTTATTTCTAAGGGAAAATAATTTCAAATTCCTTCCTGAATGCATCAAAGAATTTCACAACCTCCACACTCTTGATGTGAGTCATTGCAAGCATCTTCAAGAAATTAGAGGGGTTCCACCAAAATTAAAGTATTTTAAGGCAATAAACTGTATATCCTTGAGTTCCTCGAGCTCAAGCATGTTGCTGAATAAGCGACTGCACGAGGCTCGAAAAACTGAATTCTGGTTTTCAGGAACAAGTATTCCAGAGTGGTTTGATCACCAAAGTAGTGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAGTTTCCTTCCAAAGTTCTTTCTCTTCTTATTGCACCTGTGGGTGATACAGATGAGTTTGATTTCATTAGACCTATGGTGTTCATTGATGGCAAAGTTCAAGAATCAAAATTCTTTTGTTTCCACAAAATAGAGAGGATGTTTGAATTGGATCAAACATACCTCTTTGATCTACAAATTGTACCTGTCTATGGTAATTTGTTTGAACTACCTTTAGGAAACGAATGGAAGCATATGGAGGTTACATATGAAGGTGTGATAAAGGCCTCAATTGTTAAAGCAACAGGAATCCATGTATTCAAAGAAGAAAACAACATCATGGAGGACATTTGGTTTGATGATTATTATAGCAACAAGAAAATAGACAAAGATCTAAATGGTTCTCAATCACAAAACCACTCCTTGTTACAAAGCATAGTTTGGGAACCAACTCACCTAGGGTATGAGTGA	3240	0.3809	MATTTSHGFTYDVFLSFRGEDTRYAFTANLFKALDDKGIHSFFDDDKLESGEEITATLVKAIEESRIAIVVLSPNYASSSFCLDELATILHCKTKGLFVIPVFYKVDPSHVRHQKGSYGEALAEHQKRFKDKKEKLQKWKVALRQVADLSGYHFKDGDEYQYNFIGRIVERVSREINRAPLHVADHPVGLLSQVLKVKKLLDVGSNDVVHIIGIHGMGGIGKTTLALEAYNLIVDDFDGSCFLQNVRVESNKHGLKHLQALILSEILGEKNINLASVQRGISMIQQRLRRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRVIVTTRDEQLLKSHKVERTYEVEELNKYDSLQLLIWNAFKRANFDPSYEDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGEILEILKVSFDALGEEEKSVFLDIACCFKGSNLTEVEHILGVLYDNNMKHHIGVLVEKSLIKVKVWRSVVEMHDLIEDMGRQIDQQKSPKEPGKHRRLWLPKDIIHVLKHNTGTSRIKIICLDLSIREKEETLEWNANAFKRMKNLKILIIRNGKFSKGPNYFPESLSVLEWHGYPSNCLPSNFLPNNLVICKLTDSSLVSFGFHGSLKASLKSKFENLTVLNFDQCKYLTQIPDMSDLPNLEEVSFKKCGSLIAVHDSIGFMTKLKILNAEGCIKLMSFPPLNLPTLESLKLSYCSNLEKFPEILGKMGNIRVLQLEELPIKELPVSFQNLIRLRDLILSCEIVHLPSSIVMMPELLDICVTNCKEWQWLKSDEGEDNIGSMVSSKVDWFFASSCNLDDQFFSAGFMQLAQVRSLFLRENNFKFLPECIKEFHNLHTLDVSHCKHLQEIRGVPPKLKYFKAINCISLSSSSSSMLLNKRLHEARKTEFWFSGTSIPEWFDHQSSGPSSSFWFRNKFPSKVLSLLIAPVGDTDEFDFIRPMVFIDGKVQESKFFCFHKIERMFELDQTYLFDLQIVPVYGNLFELPLGNEWKHMEVTYEGVIKASIVKATGIHVFKEENNIMEDIWFDDYYSNKKIDKDLNGSQSQNHSLLQSIVWEPTHLGYE*	1080

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g1483	1079	Gene3D	-	9	177	IPR035897	-
	Pvu4g1483	1079	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	14	918	-	-
	Pvu4g1483	1079	Gene3D	-	345	429	IPR042197	-
	Pvu4g1483	1079	PRINTS	Disease resistance protein signature	211	226	-	-
	Pvu4g1483	1079	PRINTS	Disease resistance protein signature	287	301	-	-
	Pvu4g1483	1079	PRINTS	Disease resistance protein signature	380	394	-	-
	Pvu4g1483	1079	PRINTS	Disease resistance protein signature	698	714	-	-
	Pvu4g1483	1079	Coils	Coil	122	142	-	-
	Pvu4g1483	1079	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	152	IPR035897	-
	Pvu4g1483	1079	ProSiteProfiles	TIR domain profile.	9	176	IPR000157	GO:0007165
	Pvu4g1483	1079	Pfam	NB-ARC domain	196	411	IPR002182	GO:0043531
	Pvu4g1483	1079	Gene3D	Ribonuclease Inhibitor	494	933	IPR032675	-
	Pvu4g1483	1079	SUPERFAMILY	L domain-like	549	893	-	-
	Pvu4g1483	1079	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	439	IPR027417	-
	Pvu4g1483	1079	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	918	IPR044974	GO:0006952
	Pvu4g1483	1079	SMART	till_3	10	149	IPR000157	GO:0007165
	Pvu4g1483	1079	Pfam	TIR domain	11	176	IPR000157	GO:0007165
	Pvu4g1483	1079	Gene3D	-	178	341	IPR027417	-
	Pvu4g1483	1079	SUPERFAMILY	"Winged helix" DNA-binding domain	416	524	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g1483	Pvu-Chr4	41893518	41897559	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g1483	11	780	WRKY Transcription Factor Family	AT4G12020	30.177	1.30e-76	275

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g1483	-		-	var:108344036	1675.22