Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1480 ATGACAACTCCAAGTTCACATGGATTCACCTATGATGTGTTCCTGAGCTTTAGAGGGGAAGACACACGTTATGCTTTCACTGCCAATCTCTTCAAAGCTCTTTCTGACAAGGGAATTCACACTTTCTTTGATGATGACAAACTTGAAAGCGGAGAAGAAATAACAACAACACTTGTGAAGGCAATTGAAGAGTCTAGGATTGCCATAGTTGTGCTCTCTCCCAACTATGCTTCTTCCTCCTTTTGCTTGGATGAACTCGCTACCATCCTTCACTGCAAGACTAAAGGGTTGTTTGTTATACCCGTGTTTTATAAGGTGGATCCTTCTCATGTAAGACATCAGAAAGGTAGCTATGGAGAAGCATTGGCTGAGCATCAAAAGAGGTTCAAAGATAAGAAGGAGAAGCTGCAGAAATGGAAGGTGGCTCTGCGTCAAGTTGCTGACTTATCTGGCTATCATTTTAAAGATGGAGATGAATACCAACACAACTTTATTGGGAGAATTGTTGAACGGGTTTCTAGGGTGATTAATCGTGCTCCTTTACATGTTGCGGATCACCCAGTTGGTCTACTGTCACAAGTGCAAGAGGTGAAGAAACTTTTGGATGTTGGATCTAATGATGTTGTCCACATGATAGGGATCCATGGAATGGGAGGGATAGGAAAAACTACAATTGCTCTAGAAACATATAATTTGATTGCTAATGATTTTGATGGCTCGTGTTTTCTTCAAAATGTTAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCCTCATTCTTTCCGAAATACTTGGAGAGAAGAACATCAACTTAGCAAGTGTGCAACGAGGAATTTCAGTGATACAACAAAGGCTCTGTAGGAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACCGAAAGCAGTTACAAGCATTTGCTGGAAGATCCGATTGGTTTGGTCCCGGGAGCAGAATTATCATTACCACTCGGGACGAACAACTACTAAAATCTCATGAGGTTGGAAGAACTTATGAGGTGGAGGAATTGAACGAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAGTTTTCATCCAAGTTTCGAGGATGTCTTGAAACGTGTAGCAACTTATGCTTCTGGTCTCCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTAGAAAAAGTGTGGAGGAATGGGAGTCTGCTATTGAACATTACAAAAGAATTCCTAATGGTGAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAAGAAAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGAAGTAATCTCACAGAAGTTGAACATATACTTGGTGTTCTTTATGATAACAACATGAAACATCATGTTGGGGTGTTGGTAGAAAAATCTCTCATAAAGGTTTGGCCTAGAAGGCGTATTGAAATGCACGACTTGATTGAGGACATGGGTAGGCAAATTGACCAGCAAGAGTCACCCAAAGAGCTAGGGAAATGCAGGAGATTATGGTTACCTAAAGATATCATTCATGTTTTAAAACACAACACATGCAAATTTTTAACACAGATACCTGATATGTTTGGTCTCCCAAATTTGGAGGAAGTTTCGTTTAAAAAGTGTGAGAGTTTAGTTGCAGTTCACGACTCAATTGGTTTTATGACTAAACTGAAAATATTAAATGCGGAAGGTTGCAGGAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGTCTAAAACTTTCATATTGTTCGAATCTAAAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACGTAAAGGTACTTCGATTGGATGATCTTCCCATAATAGAATTGCCAGTTTCGTTTCAGAATCTTATTCGACTCACACACTTATCCATGTCATGTGAAATTGTTCACTTACCAAGTAACATTATCATGATGCGTGAGTTGTTGGTTTTTGAAGTTATTAATTGCAAGGAGTGGCGATGGGTAAAATCCGAAGAGGGTGAAGATAACATAGGCTCAATGGTTTCTTCAAAGGTAGATTGGTTTTTCGCCTCGTCTTGCAACTTTGGTGATCACTTATTCTCAGCAGGTTTCATTCAGTTGGCACAAGTGCATATTTTATATCTAAGGGAAAATAATTTCAAATTCCTTCCTGAATGCATCAAAGAATTTCACAACCTCGAATCTATTGATGTGAGTCATTGCAAGCATCTTCAGGAAATTAGAGGGATTCCACCAAAATTAAAGCATTTCACGGCAGTAAACTGTATATCCTTGAGTTCCTCGAGCTCAAGCATGTTGTTGAATAAGCAACTTCACGAGGCTGGAAAAACTGAATTCTGGTTTCCAGGAACAAGTATTCCAGAGTGGTTTGATCAACAAAGCAGTGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAAAGTTCTTTCTCTTTTTATTGCACCTATGTGTGATGAGTCACGTGTCATTAAACCTATGGTGTTCATTGATGGCAAAGTTCATGAATCAATATTCTTTTATTCCAAGGAACTAAAGAAGAAGTTTGAATTGGATCACACATTCCTCTTAGATCTACAAGCGCCACATGTTTGTGGTAATTTTTCTAAATTACCTTTAGCAAAGGAATGGAAGCATGTGGAGGTTACATATGAAGGTGTGATAGAGACCTCAATTATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACAACATCATGGAGGACATTCGGTTTGATGATCCTTATAGTAACAAGAATGTAGACAAATATCTAAATGTTTTTCAATCACAAAACCATTCCTTGTTACAAAGCATAGCTTGA 2862 0.384 MTTPSSHGFTYDVFLSFRGEDTRYAFTANLFKALSDKGIHTFFDDDKLESGEEITTTLVKAIEESRIAIVVLSPNYASSSFCLDELATILHCKTKGLFVIPVFYKVDPSHVRHQKGSYGEALAEHQKRFKDKKEKLQKWKVALRQVADLSGYHFKDGDEYQHNFIGRIVERVSRVINRAPLHVADHPVGLLSQVQEVKKLLDVGSNDVVHMIGIHGMGGIGKTTIALETYNLIANDFDGSCFLQNVREESNKHGLKHLQTLILSEILGEKNINLASVQRGISVIQQRLCRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRIIITTRDEQLLKSHEVGRTYEVEELNENDSLQLLIWNAFKRESFHPSFEDVLKRVATYASGLPLALEVIGSNLVRKSVEEWESAIEHYKRIPNGEILEILKVSFDALGEEEKSVFLDIACCFKGSNLTEVEHILGVLYDNNMKHHVGVLVEKSLIKVWPRRRIEMHDLIEDMGRQIDQQESPKELGKCRRLWLPKDIIHVLKHNTCKFLTQIPDMFGLPNLEEVSFKKCESLVAVHDSIGFMTKLKILNAEGCRKLMSFPPLNLPTLESLKLSYCSNLKKFPEILGKMGNVKVLRLDDLPIIELPVSFQNLIRLTHLSMSCEIVHLPSNIIMMRELLVFEVINCKEWRWVKSEEGEDNIGSMVSSKVDWFFASSCNFGDHLFSAGFIQLAQVHILYLRENNFKFLPECIKEFHNLESIDVSHCKHLQEIRGIPPKLKHFTAVNCISLSSSSSSMLLNKQLHEAGKTEFWFPGTSIPEWFDQQSSGPSSSFWFRNKFPAKVLSLFIAPMCDESRVIKPMVFIDGKVHESIFFYSKELKKKFELDHTFLLDLQAPHVCGNFSKLPLAKEWKHVEVTYEGVIETSIIKATGIHVFKEENNIMEDIRFDDPYSNKNVDKYLNVFQSQNHSLLQSIA* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1480 953 Pfam NB-ARC domain 193 411 IPR002182 GO:0043531
Pvu4g1480 953 PRINTS Disease resistance protein signature 211 226 - -
Pvu4g1480 953 PRINTS Disease resistance protein signature 287 301 - -
Pvu4g1480 953 PRINTS Disease resistance protein signature 380 394 - -
Pvu4g1480 953 PRINTS Disease resistance protein signature 583 599 - -
Pvu4g1480 953 Coils Coil 122 142 - -
Pvu4g1480 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 439 IPR027417 -
Pvu4g1480 953 Pfam TIR domain 11 174 IPR000157 GO:0007165
Pvu4g1480 953 Gene3D Ribonuclease Inhibitor 493 788 IPR032675 -
Pvu4g1480 953 Gene3D - 9 176 IPR035897 -
Pvu4g1480 953 Gene3D - 345 429 IPR042197 -
Pvu4g1480 953 Gene3D - 177 338 IPR027417 -
Pvu4g1480 953 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Pvu4g1480 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 528 803 IPR044974 GO:0006952
Pvu4g1480 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 524 IPR044974 GO:0006952
Pvu4g1480 953 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 524 - -
Pvu4g1480 953 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 528 803 - -
Pvu4g1480 953 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Pvu4g1480 953 SUPERFAMILY L domain-like 483 776 - -
Pvu4g1480 953 SUPERFAMILY "Winged helix" DNA-binding domain 416 523 IPR036390 -
Pvu4g1480 953 SMART till_3 10 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1480 Pvu-Chr4 41863873 41867749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1480 514 632 WRKY Transcription Factor Family AT5G45050 32.500 8.67e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1480 - - var:108344036 1267.68