Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1479 ATGGCAACTCCAAGTTCCCATGGATTCACCTATGATGTGTTCCTCAGCTTTAGAGGGAAAGACACGCGTTATGCTTTCACTGCCAATCTCTTCAAAGCTCTTTCTGACAAGGGAATTCACACTTTCTTTGATTATGACAAACTTGAAAGCGGAGAAGAAATAACAGCAACACTTCTCAAGGCAATTGAAGAGTCTAGGATTGCCATAGTTGTCCTCTCTCCCAACTATGCTTCTTCCTCCTTTTGCTTGGATGAACTCGCTACCATCCTTCACTGTAAGAGTAAAGGGATGTTGGTTATACCCGTCTTTTATAACGTGGATCCTTCTCATGTAAGACATCAGAAAGGTAGCTATGGAGAAGCACTGGCTAAGCATCAGAAGAGGTTCAAAGCTGAGAAGGAGAAGCTGCAGAAATGGAAGCTGGCTCTGCGTCAAGTTGCTGACTTATCTGGTCATCATCATTTTAAAGAAGGATATGAATACCAGCACCATTTTATTGGGAGAATTGTTGAATGGGTTTCTAAGGTGATTAATCATGTTCCTTTACATGTTGCGGATCACCCAGTTGGTCTGTCGTCAGAAGTGCTAAAAGTGAAAGAACTTTTGGATGTTGGATGTGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGAGGGATAGGAAAAACAACACTTGCTCTAGAAGTGTTTAATTTGATTGCTCATTATTTTGATGGCTCGTGTTTTCTTCAAAATGTTAGAGAAGAATCAGAAAAATATGGGTTAAAACACCTTCAGAGCCTCATTCTTTTCGACATACTTGGAAAGAAAAACATCAACTTAGCAAGTGTGCAACGAGGAATTTCAGTGATACAACAAAGGCTTCGTAGGAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACCGAAAGCAGTTACAAGCATTTGCTGGAAAATCCGATTGGTTTGGTCCCGGCAGCAGAGTTATCATTACCACTCGGGACAAACATCTGCTAAAATCTCATGAGGTTGAAAGAACTTATGAGGTGGAGGAATTGAACGAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAATTTTGATCCAAGTTACGAGGATGTCTTGGAATGTGTAGCAACTTATGCTTCTGGTCTCCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTGGAGGAATGGGAGTCTGCTATTGAACATTACAAAAGAATTCCTGATCGTGAAATCCTAAAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAAGAAAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGAAGTAATTTGACAGAAGTTGAACATATACTTGGTGCTCTTTATGATAACAACATGAAACATCATGTTGGGGTGTTGGTAGAAAAATCTCTCATAAAGGTTTGGCGTGGAAGGCGTAGTGTTGTTGAAATGCACGACTTGATTGAGGACATGGGTAGGCAAATTGACCAGCAAGAGTCACCCAAAGAGCCAGGGAAACGCAGGAGATTATGGTTACCTAAAGATATCATTCATGTTTTAAAACACAACACAGGAACTAGCAGAATTGAAATCATATGTCTGAATTTGTCTATAAGTGAGAAAGAAGAAACACTAGAATGGAATGCAAACGCCTTCAAAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATAGTAAATTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGCGTTCTGGAATGGCATGGATACCATTCAATTTGTTTACCATCAAATTTTCTTCCAAATAAACTCGTCATCTGCAAGTTAACTGGCAGCAACCTTGTGTCATTTGGGTTCCATGGCTCGTTGAAGAAGTTCGAGAATCTAACTGTCTTGAATTTTGACTATTGCAAATTTTTAACACAAATACCTGATATGTCTAATCTTCCAAATTTGGAGGAAGTTTCATTCAAAGGGTGTGAGAGTTTAGTTGCAGTTCACGACTCAATTGGTTTTATGACTAAACTGAAAATATTGAATGCGGAAGGTTGCAGGAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGTCTAGAACTTTCATATTGTTCGAATCTAGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAGGAAACTTGAATTGAAGTTTTCCGTAAAAGAATTGCCAGTTTCGTTTCAAAACCTTATTGAACTCGAAGACTTAAGTTTGTCATGTGAAATTCTTCACTTACCAAGTAGTATTTTCATGATGCCTAAGTTGTTGGCTATTAAGGTTGCTAATTGCAACGAGTGGCAATGGGTAAAATCAGAAGAGGATGAAGATAACACAAGCTCAATGGTTTCTAGGACGCGAAAATTGTTTATAGCCATGTTTTGCAACCTTGATGATCACTTCTTCTCAGCAGGTTTCATGCAGTTGACACAAGTTTATTATTTATGTCTAAGTGAAAGTAATTTCAAATTCCTTCCGGAATGCATCAAAGAATTTCACAACCTTAACACTATTAATGTGAGTTATTGCGAGCATCTTCAGGAAATTAGAGGGATTCCACCAAAATTAATGTGTTTCATGGGAAAAAACTGTATATCCTTGAGTTCCTCGAGCAGAAGCATGTTGCTGAATAAGCAACAGCACGAGGCTCAAGAAACTCAATTCAATTTTCCAGGAGCAAGTATTCCAGAGTGGTTTGATCACCAAAGCAGTGGACCTTCGTGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAAAGTTCTTTCTCTTCTTATTGCACCTGTGGGTGATTTAGGTTTCATTAGACCTATGGTGTTCATTGATGGCAAAGTTCAAGGATCAAAATTCAATCGTTTCAATCAAATAGAGAGGCCGTTGAATTTGGATCACACATACCTCTTTGATCTACAAGTGGGATTTTACTATGGTAGTTTGTTTAAAGTACCTTTAGCAAAGGAATGGAAGCATGTGGAGGTTACATATGAAGGTGTGATAGAGACCTCAATTATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACAACATCATGGAGGACATTCGGTTTGATGATCCTTATAGCAACAAGAAAGTAGACAAATATCTAAATGGTTCTCAATCACAAAACCTCTCCTTGTTACAAAGCATAGGTTTGTTCACTACATGCAAATTTTTCCTAGGTTTTTTTCTTTTTGTTTTCTTGCTTTTATTTTTTATTTTATTTGAGTGA 3267 0.3786 MATPSSHGFTYDVFLSFRGKDTRYAFTANLFKALSDKGIHTFFDYDKLESGEEITATLLKAIEESRIAIVVLSPNYASSSFCLDELATILHCKSKGMLVIPVFYNVDPSHVRHQKGSYGEALAKHQKRFKAEKEKLQKWKLALRQVADLSGHHHFKEGYEYQHHFIGRIVEWVSKVINHVPLHVADHPVGLSSEVLKVKELLDVGCDDVVHMIGIHGMGGIGKTTLALEVFNLIAHYFDGSCFLQNVREESEKYGLKHLQSLILFDILGKKNINLASVQRGISVIQQRLRRKKVLLILDDVDNRKQLQAFAGKSDWFGPGSRVIITTRDKHLLKSHEVERTYEVEELNENDSLQLLIWNAFKRENFDPSYEDVLECVATYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPDREILKILKVSFDALGEEEKSVFLDIACCFKGSNLTEVEHILGALYDNNMKHHVGVLVEKSLIKVWRGRRSVVEMHDLIEDMGRQIDQQESPKEPGKRRRLWLPKDIIHVLKHNTGTSRIEIICLNLSISEKEETLEWNANAFKRMKNLKILIIRNSKFSKGPNYFPESLSVLEWHGYHSICLPSNFLPNKLVICKLTGSNLVSFGFHGSLKKFENLTVLNFDYCKFLTQIPDMSNLPNLEEVSFKGCESLVAVHDSIGFMTKLKILNAEGCRKLMSFPPLNLPTLESLELSYCSNLEKFPEILGKMGNIRKLELKFSVKELPVSFQNLIELEDLSLSCEILHLPSSIFMMPKLLAIKVANCNEWQWVKSEEDEDNTSSMVSRTRKLFIAMFCNLDDHFFSAGFMQLTQVYYLCLSESNFKFLPECIKEFHNLNTINVSYCEHLQEIRGIPPKLMCFMGKNCISLSSSSRSMLLNKQQHEAQETQFNFPGASIPEWFDHQSSGPSCSFWFRNKFPAKVLSLLIAPVGDLGFIRPMVFIDGKVQGSKFNRFNQIERPLNLDHTYLFDLQVGFYYGSLFKVPLAKEWKHVEVTYEGVIETSIIKATGIHVFKEENNIMEDIRFDDPYSNKKVDKYLNGSQSQNLSLLQSIGLFTTCKFFLGFFLFVFLLLFFILFE* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1479 1088 Pfam TIR domain 11 175 IPR000157 GO:0007165
Pvu4g1479 1088 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Pvu4g1479 1088 Pfam NB-ARC domain 195 411 IPR002182 GO:0043531
Pvu4g1479 1088 SUPERFAMILY L domain-like 550 887 - -
Pvu4g1479 1088 Coils Coil 122 142 - -
Pvu4g1479 1088 SUPERFAMILY "Winged helix" DNA-binding domain 417 526 IPR036390 -
Pvu4g1479 1088 Gene3D Ribonuclease Inhibitor 732 883 IPR032675 -
Pvu4g1479 1088 Gene3D - 9 177 IPR035897 -
Pvu4g1479 1088 SMART till_3 10 149 IPR000157 GO:0007165
Pvu4g1479 1088 ProSiteProfiles TIR domain profile. 9 177 IPR000157 GO:0007165
Pvu4g1479 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 440 IPR027417 -
Pvu4g1479 1088 Gene3D Ribonuclease Inhibitor 532 723 IPR032675 -
Pvu4g1479 1088 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 914 - -
Pvu4g1479 1088 PRINTS Disease resistance protein signature 212 227 - -
Pvu4g1479 1088 PRINTS Disease resistance protein signature 288 302 - -
Pvu4g1479 1088 PRINTS Disease resistance protein signature 381 395 - -
Pvu4g1479 1088 PRINTS Disease resistance protein signature 695 711 - -
Pvu4g1479 1088 Gene3D - 178 341 IPR027417 -
Pvu4g1479 1088 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 914 IPR044974 GO:0006952
Pvu4g1479 1088 Gene3D - 346 430 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1479 Pvu-Chr4 41848396 41852348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1479 11 776 WRKY Transcription Factor Family AT4G12020 30.051 2.25e-76 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1479 - - var:108344036 1582