Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1478 ATGTCTTCTGCCGGCGGCGACGGTACCTCCGGTGAGCCTCGCCAATACTTCTGCCACCAGTGCAATCGCACCGTCTCTGTAACCCCTTCCCCCTCCTCCGATCTCATCTGCCCCGATTGCAACAGCGGTTTCCTCGAAGAACTCGAAATCCCTAACCCTAACCCTACCCCATCCAATCCTTTCTTCCCTGACTTCCCTCTCGCTGGGGCCACCGCCATTCCCTTCGTCTTCCCAGGAGGAGCGGGCCAGCCCTTTGACGATTTCTCCACGCTCTCTGGCATTCGATCTGACGCCGCCACCGCCGATACTGCCCTCGCGCCCTTTGTCCTCCTCCAGAACTACTTACAAACCCTAAGAGCCGGTGGCGGCGGCGGCAACCTTCAACTTGTGATTGAGTCCGGCGACCCCGGCGGAGCGTTCCGGTTTCCCGGAATCACCCACGGCGACTACTTCTTCGGGACGGGCCTTGAGGAGCTGATCCAGCACCTCGCCGAGAACGATCCGAACCGCTATGGCACCCCGCCGGCTTCTAAGACGGCCGTCGAGGGGCTGCCGGACGTCTCGGTCACCGAGGAGCTGCTTGCATCGGATTCCTCACAATGCGCAGTGTGTAAAGACACGTTCGAACTCGGTGAAACCGCGAAGCAGATGCCCTGTAAGCATATATATCACGCGGACTGCATTTTGCCTTGGTTGGAAATGCATAATTCCTGTCCAGTTTGTCGGTATGAGCTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCAACGTGGTAGCGGTGGTACCGGCAGTGGGGTGGCTTCCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGTTCTGCGGATTCGTCTGGTGGCGGAGACAATTCGCAGCGGAGGAGGTTTAGGGTGTCTTCGTTGTGGCCCTTCAGGCAATCTGTTTCTTCTGGTGCTGAGACAAGTAATGTTGGCGGTGGCAACAATGATGATAACAGTAATGTCAATAGTGGGGAAAACAATAGTGGGCAATCGAATTCTGGAAATAGGGGGAATCAGAATTTTGAGTCGGAGACCAGACAGGAAGATCTAGATTGA 1080 0.5667 MSSAGGDGTSGEPRQYFCHQCNRTVSVTPSPSSDLICPDCNSGFLEELEIPNPNPTPSNPFFPDFPLAGATAIPFVFPGGAGQPFDDFSTLSGIRSDAATADTALAPFVLLQNYLQTLRAGGGGGNLQLVIESGDPGGAFRFPGITHGDYFFGTGLEELIQHLAENDPNRYGTPPASKTAVEGLPDVSVTEELLASDSSQCAVCKDTFELGETAKQMPCKHIYHADCILPWLEMHNSCPVCRYELPTDDPDYEQRAQRGSGGTGSGVASQVNWNLAVGPGGSADSSGGGDNSQRRRFRVSSLWPFRQSVSSGAETSNVGGGNNDDNSNVNSGENNSGQSNSGNRGNQNFESETRQEDLD* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1478 359 MobiDBLite consensus disorder prediction 258 276 - -
Pvu4g1478 359 Pfam Ring finger domain 200 242 IPR001841 -
Pvu4g1478 359 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Pvu4g1478 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 248 IPR013083 -
Pvu4g1478 359 MobiDBLite consensus disorder prediction 285 349 - -
Pvu4g1478 359 CDD RING-H2_RNF126_like 200 242 - -
Pvu4g1478 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 309 - -
Pvu4g1478 359 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
Pvu4g1478 359 SUPERFAMILY RING/U-box 185 248 - -
Pvu4g1478 359 SMART ring_2 201 241 IPR001841 -
Pvu4g1478 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 9 309 - -
Pvu4g1478 359 MobiDBLite consensus disorder prediction 252 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1478 Pvu-Chr4 41842450 41844030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1478 148 254 C3H Transcription Factor Family AT5G01980 52.336 2.11e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1478 - K11982 gmx:100784504 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1478 4 41842450 41844030 Pvu4g1478 4 41842450 41844030 ECH