Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1457 ATGGATTGTGTTGTACAGAACTATACAGCTGGAAATCCTGCTCCTGTGTTGTATGTTAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATTATATATTTGGGTCCTTGTTTGGAAGTGTTGAGGCTGCTAAGTCTGGTCTTCAAGTCAAACTAATGCAGGAAGGACGAATGAGGGGTCAAGCATTTCTGACATTCCCCTCTATTGAATTGGCTCATCTTGCTCTGAATCGGGTGAATGGATATGTATTAAAAGGAAAGCCAATGATTATACAATTTGGTCGAAATCCGCTGCTGCTAAAGCTTGATTTAGTGCATTTATTGTATAACAGATGA 339 0.3864 MDCVVQNYTAGNPAPVLYVKNLAKDVIADDFYYIFGSLFGSVEAAKSGLQVKLMQEGRMRGQAFLTFPSIELAHLALNRVNGYVLKGKPMIIQFGRNPLLLKLDLVHLLYNR* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1457 112 PANTHER UNCHARACTERIZED 4 98 IPR045164 -
Pvu4g1457 112 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 4 98 - -
Pvu4g1457 112 SMART rrm1_1 16 93 IPR000504 GO:0003723
Pvu4g1457 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 89 IPR000504 GO:0003723
Pvu4g1457 112 Gene3D - 10 99 IPR012677 -
Pvu4g1457 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 97 IPR000504 GO:0003723
Pvu4g1457 112 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Pvu4g1457 112 CDD RRM2_RBM40_like 16 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1457 Pvu-Chr4 41653337 41654393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1457 17 93 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 7.27e-07 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1457 K13157 - pvu:PHAVU_004G137800g 221.861