Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1452 ATGTCAGCAGCATCCTTTGGCTACGACGTGTTCCTCAGCTTCAGAGGCTCTGATACTCGCTACGGTTTCACTGGCAATCTCTACAAAGCTCTTTCTGACAAGGGAATCCATGTCTTCTTTGACGATGAGGAGCTTCAACGAGGGGATGAAATTGGAGAAGCACTTATTACTGCCATTAAACACTCTAGGATGGCCATTGTTGTCTTCTCCAAGAACTATGCTTCTTCTTCCTTTTGCTTAGATGAACTTCTCAAAATCATTGACTGTGTTAAGGCAAAGGGTCGCTTCATTTTGCCCATTTTCTACGACGTCCACCCTTCTCATGTTCGACGCCAGTCTGGGAGTTATGCAGAAGCTTTGGCCATGCACGAGCAAAGGTTCACACGCAGCAACCAAAACCTCAACTTTAACATGGAAAAGTTGCAAAAATGGAAGATGGCTCTTAACCAAGCAGCTAATGTGTCTGGCAAGCATTACAAACTTGGAAGTGAATATGAACATGAGTTTATAGCAAAGATAGTTAAAGAGGTCTCCAACAAGATAAATCGCAGACCTTTGCATGTTGCGGATTACCCCGTTGGGATGGAGCATCGAGTGCAAAAAGTAAAGTCACTTCTTCAATTTGGATCTGATATTGGAGTCCACATTGTGGGGATTCATGGAATAGGTGGAATGGGGAAGAGCACGCTTGCTCGAGCAGTTTACAATTCAATTTCAGATCAATTTGAAGGCTTATGTTTTCTTGATGGTGTTAGAGAAAATGCTGTTAAACACGGGTTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTTAGTAAAGGGATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGACAAACTAGAACAAGTTCGAGCAACTGTTGGAGAGCGTGATTGGTTTGGTTGTGGCAGTAGAGTCATCATAACTACTAGAGACAAACATTTGCTTCATGGGGTTGATGGAAAATATGAGGTAGAGGATTTGAATGAGGAAGAAGCACTTGAATTGCTTAGTTGGAATGCTTTTAAAGATGACAAAGTTGATCCAAGTTACAAGGACATTTCAAACCAAGCAGTGGCTTATGCTTCTGGTCTTCCACTAGCCTTGGAAGTAATAGGTTCCTTGTTGTTCGGGAAAGGCACAAGAGAATGGGAATCTGCATTAGATCAGTTCAAAAAGATCCCTAACAAAAGGATCCAAGACATACTTAAGGTAAGCTATAATGCTTTAGAGGAAAATCAACAGAGAATTTTTCTAGACATCGCTTGCTGCTTGAAAGGATATGAATTGCAAGAGGTTGAAGATATACTTGGTGCTCATCATGGTGTTTGCATGAAATATGGCATAGGAGTGTTGGTGGATAAATCTCTCATAAAAATTAAGAATGGCTGTGTGACACTTCATGAATTGATAGAGGTTATGGGGAAGGAAATTGATCGCCAAGAGTCACCCAAAGAGCTTGGGAAACACAGGAGGTTATGGTTCCATAAAGATATAATTCAAGTTTTTGCAGAAAATTCAGGGACTAGTGAGATTGAAATCATTTGTTTGGATTTCCCCTTATTTGAAGAAGATGAAGAAGTATTTGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGGAAAACCTCAAAACACTAATTATAAGAAACTCTCATTTTTCAAAAGGTCCAACATATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGACATATCCATTACATGATTTACCAACTGATTTTCATCCCAACAAACTTGCCATATGCAAATTACCCAGAAGTTGCTTTACATCACTTGAGTTAGCTACCATATCAAAGAAGTTCATGAATCTGACAGTTTTAAATTTTGATGGGAGTGAATGTTTGACGAAAATACCTGACATATCCACTCTCCAGAATTTAGAAAAACTGACATTTGAGTGTTGTGAGAATTTAGAAGCAATTCATGATTCTGTGGGTTTTCTTGATAAACTTAAAGTCTTGAGTGCTTTTGGTTGCAGCAAGCTTACGAGTTTTCCACCCATCAAGTTGATCTCTCTTGAACAACTTGATCTTTCATCTTGTTCTAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATAACACAGCTAGAGTTGAAGAATACTCCCTTGAAAGAATTCCCATCTTCATTTAGAAATCTTGTTCGACTTCAAGACTTGGTGCTGGTTGACTGTGGAAATGTTCAGTTGCCGAGTAGCATTGTTATGTTGCCAGAACTGGCTGAGATTTTCGCCCTGGGATGTAAAGGGTGGCTGTTGCTAAAACAAGACGAGAATGATGAAGAAAAAGTAAGCTTTGTGTCTTCAAATGTAAAATGTCTCTGTCTCTCAGGCTGCAATCTACTAGATGAATACTTTCCCATGGTTTTAGCATGGTTTGGTAATGTGAAAGAGTTAGAGCTATCGAGCAATAACTTCACATTTCTTCCTGAATGCATCAAAGAATGTCGCTCGTTAACATTACTTAATTTGGATAACTGTGAGCATCTTAAAGAAATTAGAGGGATTCCACCAAATTTAGAATATTTCTCTGCTGGAAATTGCCAATCCTTGAGTTTCTCTTGTTCAGCCATGCTATTGGACCAGGAACTGCATGAAGCTGGAAACACCATGTTTTGTTTGCCAGGATCTAGGATCCCAGAATGGTTAGAGCAACAAAGTATAGGTCCATCATTATGTTTCTGGTTTCGTGAGAAGTTTCCTGTCATGGATCTCTGTTTTGTTCTTGGGCCAATGGGTAAGGACTCAATTTTGTTTAGACCAATCATGACCATCAATGGCAACACAATGGAGATTCAGTCCTTAACTGATAAGAGGTTTTGTTTCGACTTCCCAGCATTAGATTATCATATACTTATCATTGGTACAAAGTACATGAAGCTTGGAGATAATCTGGATAAATCACTCTCAGAAAATGAATGGAATCATGTGGTTGTTTCCATTGCTCTTGATTTTGAGCCAACCCCAGAAGAGATTTTTGTCAAGCAAACTGCACTCCATGTAATCAAACCAGAAAGTAGCATGGATGATATCCAATTCACTGATCCTTGTAACCAACCATCCTTCAAAGAGAAGCAAACATTGGTTGACACTGTTGATTGTCACAGACAATTTATGCAGCAGCAAACCACTTTGGTTCCATTGAAACCACATGTGAGACAAGGCAGAAAGTTATTTTCATTGATTCCACCAGAAGCATGCAAAAATAACGTGAATTGGGATTCATTTTCACCTGGAACAAGAAGCATTGCCAGTGTCCAGGAATATGGAACTGCATCACAGAAATTACGTTTGGACATGGGAGCTTTGCAATTTGTTCAGCAGCGGAAAAGATTGGCTATTTTGGGTTTGTTGCAAGAACGACGCACGGCTTCATTGGATTTACTGCAACGTAGGGGCAGAGAATTTCTTTCATTGCTTTCTCCTCCATCATTGGAGTTGATGGTCTCATGGCAGAGGAGATGCATCACCACTGTCCAAGGTTTGCAGGAGCAACATTTACCTTCCAGCACTGAACAAAACTTTGAAGGCTCTAATGGCATCAATGAAGCCAAAGTGAAGGAAGTGGTAAAATGCAGCAACCATTATGGAAATGACAATGAGAGAAACCCATTAGTAGAGCAGCTACCAATGACAAAGGATGATGATGTTCATAACAAGAGATACCAACATGTCTGGAAAATGGCTTGGGATCCAATGGAATTAGAACATCTTGTACATATCCAGAAGATCAATTTGTCTCAAAGATGA 3843 0.395 MSAASFGYDVFLSFRGSDTRYGFTGNLYKALSDKGIHVFFDDEELQRGDEIGEALITAIKHSRMAIVVFSKNYASSSFCLDELLKIIDCVKAKGRFILPIFYDVHPSHVRRQSGSYAEALAMHEQRFTRSNQNLNFNMEKLQKWKMALNQAANVSGKHYKLGSEYEHEFIAKIVKEVSNKINRRPLHVADYPVGMEHRVQKVKSLLQFGSDIGVHIVGIHGIGGMGKSTLARAVYNSISDQFEGLCFLDGVRENAVKHGLVHLQEMLLSEIVGEKDIKIGSVSKGISIIKHRLHRKKVLLILDDVDKLEQVRATVGERDWFGCGSRVIITTRDKHLLHGVDGKYEVEDLNEEEALELLSWNAFKDDKVDPSYKDISNQAVAYASGLPLALEVIGSLLFGKGTREWESALDQFKKIPNKRIQDILKVSYNALEENQQRIFLDIACCLKGYELQEVEDILGAHHGVCMKYGIGVLVDKSLIKIKNGCVTLHELIEVMGKEIDRQESPKELGKHRRLWFHKDIIQVFAENSGTSEIEIICLDFPLFEEDEEVFVEWDGEAFKKMENLKTLIIRNSHFSKGPTYLPNSLRVLEWWTYPLHDLPTDFHPNKLAICKLPRSCFTSLELATISKKFMNLTVLNFDGSECLTKIPDISTLQNLEKLTFECCENLEAIHDSVGFLDKLKVLSAFGCSKLTSFPPIKLISLEQLDLSSCSSLESFPEILGKMENITQLELKNTPLKEFPSSFRNLVRLQDLVLVDCGNVQLPSSIVMLPELAEIFALGCKGWLLLKQDENDEEKVSFVSSNVKCLCLSGCNLLDEYFPMVLAWFGNVKELELSSNNFTFLPECIKECRSLTLLNLDNCEHLKEIRGIPPNLEYFSAGNCQSLSFSCSAMLLDQELHEAGNTMFCLPGSRIPEWLEQQSIGPSLCFWFREKFPVMDLCFVLGPMGKDSILFRPIMTINGNTMEIQSLTDKRFCFDFPALDYHILIIGTKYMKLGDNLDKSLSENEWNHVVVSIALDFEPTPEEIFVKQTALHVIKPESSMDDIQFTDPCNQPSFKEKQTLVDTVDCHRQFMQQQTTLVPLKPHVRQGRKLFSLIPPEACKNNVNWDSFSPGTRSIASVQEYGTASQKLRLDMGALQFVQQRKRLAILGLLQERRTASLDLLQRRGREFLSLLSPPSLELMVSWQRRCITTVQGLQEQHLPSSTEQNFEGSNGINEAKVKEVVKCSNHYGNDNERNPLVEQLPMTKDDDVHNKRYQHVWKMAWDPMELEHLVHIQKINLSQR* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1452 1280 ProSiteProfiles TIR domain profile. 6 181 IPR000157 GO:0007165
Pvu4g1452 1280 Gene3D - 2 178 IPR035897 -
Pvu4g1452 1280 SMART AAA_5 213 350 IPR003593 -
Pvu4g1452 1280 Gene3D Ribonuclease Inhibitor 793 897 IPR032675 -
Pvu4g1452 1280 Gene3D - 348 432 IPR042197 -
Pvu4g1452 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 442 IPR027417 -
Pvu4g1452 1280 PRINTS Disease resistance protein signature 216 231 - -
Pvu4g1452 1280 PRINTS Disease resistance protein signature 292 306 - -
Pvu4g1452 1280 PRINTS Disease resistance protein signature 383 397 - -
Pvu4g1452 1280 PRINTS Disease resistance protein signature 696 712 - -
Pvu4g1452 1280 PANTHER ARCHAEAL ATPASE 18 1011 - -
Pvu4g1452 1280 SUPERFAMILY "Winged helix" DNA-binding domain 419 524 IPR036390 -
Pvu4g1452 1280 SUPERFAMILY L domain-like 550 904 - -
Pvu4g1452 1280 Gene3D - 179 346 IPR027417 -
Pvu4g1452 1280 SMART till_3 7 154 IPR000157 GO:0007165
Pvu4g1452 1280 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Pvu4g1452 1280 Gene3D Ribonuclease Inhibitor 546 788 IPR032675 -
Pvu4g1452 1280 Pfam TIR domain 8 183 IPR000157 GO:0007165
Pvu4g1452 1280 CDD AAA 193 308 - -
Pvu4g1452 1280 Pfam NB-ARC domain 196 434 IPR002182 GO:0043531
Pvu4g1452 1280 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 1011 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1452 Pvu-Chr4 41625494 41631537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1452 3 779 WRKY Transcription Factor Family AT4G12020 31.677 1.52e-83 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1452 - - var:108344624 2263.03