Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1428 ATGGAGAAAAGTAAATCAGGGCTTAAACGGTTTTGGAATCGGTTGGGTGGTCGATCATCATCTTCTTCTTCTTCTTCCTGTAACTCCTTCGGCACCATCCAAAATCAAGACTACAGATACGATGTGTTTATCAGTTTCAGAGGTCCTGACACCCGCAACTCTTTTGTTGATCATCTCTCCTCTCATCTCCTCCGAAAGGGAATCTTCGTTTTCAACGATAACCACAAACTACAGAAAGGAGAATCCATTTCCCCGCAGCTTCTACAAGCAATTCAACATTCACGCCTTTCTATAATTGTCTTCTCCGAAAATTATGCTTCCTCCACTTGGTGTTTAGACGAAATGGCCGCCATAGCTTATTGCAAGCAACGATCTGACCACACTGTTTTCCCCGTTTTCTATGATGTAGATCCATCTCATGTAAGACATCAGAATGGGGTTTACAAGAACGACTTTGTTTCACACAGATCAAAATTCAGAAATGATCGGGACAAGGTTCGTGGATGGGAGAGGGCTATGACGGATTTGGCCAATTCAGCTGGTTGGGATCTCAGGGACAAGCCAGAGTTTGAACAGATTCAAAACATTGTTCAAGCGGTAGTTAAAAAATTAAACCATAAGTTTTCATGGTTTGTTAATGACCTTGTTGGGATACAACCACGCGTACAAGCATTAGAAGATAAATTGAGATTAAGTTCAAACAATGATGATGTTCAAGTTTTAGGAATTTGGGGAATGAATGGAATAGGAAAGACTACTCATGCTGCTGTCCTATATGACAAAATCTCTCACAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGGGATGGTGGCCATACTGCTGTACAGAGAGAAATCATTTATCAAACATTACGTGAGAACACTCTAGATATGAGTAGTCCTATTGAAATATCAGGGATTGTAAGAAATAGGCTACCCAACATTAATGTCTTCATAGTTCTGGACAATGTTGATGAGTTAGAGCAATTGGAAAATTTGGCCATAAAACCTAAATTGCTTTTGAAGGGAAGTAGAATGGTTATTACCACCACAGATGAGCATATTTTGAAAGTGTATGAAGGTGATGTATTGATACACAAGGTTTCATTATTGAATGAGAAGGATGCTTGTGAATTGTTTTGTAGAAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTGGCTGTGTGGAGTTGATTCCTGAGGTACTCACGTATGCCCAATGTCTTCCATTGGCAATTAGAGTGTTGGGTTCTTTCTTGTGTGCTCGAGAGGCTGTTGAATGGAGAGATGTGTTGAATAGATTGGAGAATAGTCCAGATAATAAAATTATGAATGTACTTCAAATAAGTGTTGATGGACTAAACCACGAGGAAAAACAAATATTTTTACACATTGCTTGTTTCTTTAGAGGGGAGAGGGAGGATTATGTTAAGCGAATTCTAGACTCTTGTGGCTTATACCCTCACATTGGGATTTCAAGACTCGTTGAGAAATCACTCATCACTATTAGCAATGAAGAAATTCTTATGCATGAATTGTTACAAGAATTAGGAAAGAAAATGGTTCGGGACCAATCTCCCGATGAACCAGGATCATGGAGTAGAATTTGGCTTCATAAAGACTTCTTGCAAGTCTTGACAACAGAAACGGGAACAGAGAAGGTGAAAGCCATAGTTTTAGATAAAAAAGAAGAAATGTCCGAATGTACTGTTGATGGATTGTCAAGAATGAAGGAGCTGACATTACTGATATTATATCACACAAAAATTTCAGGAAGCCTGGAATTTCTTTCTGACAGGCTGCGATATCTTTTGTGGCACGATTATCCTTTTGCTTCCCTGCCACCATATTTTACAGCCTCTAATCTTGTGGAATTGAATATGCCTAACAGTCACATCAAACGTTTATGGGAAGGCCTCAAGAGTTGTCCTAACTTGAGAAGGATAGATTTAAGTAACTCCAAGGACCTGACTGATACTCCTGATTTGTCCAGAATCATAAATCTTGAAAGGCTAGATCTTTCTGGATGTACGAGTTTATCACATATCCATTCATCAATTGGATTTCTCAAGAAGCTTGCTTTCTTGAATTTGCGAAATTGTTGCAATCTAGTTATCATTGACTTTGGTCGTGTAGGTAACATGAGTTCTCTGAGAGTTTTACATCTCTCGGGTTGTACTAAACTCGAAAGCACCCCAGATTTTACAAGGGCAACACATCTTGAGTACCTTGACATGGATAACTGTTCAAGTTTATCCACTATGCATGAATCTATTGGAGTCCTTTCAAATCTTACATTCTTGAGTTTGAGAGGCTGCATAGAGCTTGTCAGTATACCAACTGATATTAATTCTTTGGTATCTCTTCAAACACTGGATTTATGTGGTTGCTTGAACCTAACAGATCTGCTACCAAGACAAGCATTTTCATCCCATTTAAAATCTTTGATTCTTTTGGACCTAAGCTTTTGCAATCTACAAGAAGTGCCTGATGCTATTGGAGAGTTAAGGTGTTTGGAAAGACTGAATCTACAGGGAAACAAAATTGTTTCAGTACCTTCTTCTTTCAGGGCGCTTCATTGTCTAGCATATTTAAACTTGTCTCATTGCCATGAGCTTAAATCTTTCGATGTACTTCCAATTGAAGTAGCTACATCAGGGGGGAGGTATTTTAAAACAGTATCCGGATCACGTGATCATAGGTCAGGCTTATATCTTTTTGATTGTCCCAAGAAGTTTGGGATTTGGGAACTTGGATGGCTTTTCAGACTAATTAAGGAACCCTGTAATTTTCGGTGTGGCTTTGACATTGTTAATCCTTGGGAATGGGCAGTTCCAAAGAGGAACGTTGATATGTTTGGAGGAGATTCAATTATAAGGATAGTTGAATGTGATACAATTGACAACTGGATTGGCTTTACCTTTTGTGTAATATTTAAGGGCAACAATAGTGATGCGATTGCTAGATCTCCACATAGTTCATTTTCTTCAACGCATCCGTTTTATCTTTCTTTTGAAAGTGAATACACAGAAGAGTACTTTGATATGCGACTTAATTTGGAGGAGAATGGATCTGAACACATTTGGATAATTTACATCAGTCGAGAACACTGTCATTTTGTGAAAACAGGGGCGCATATCACATTTAAAGCGCAACCAAGTGTTAAGATCCAGGGATGGTGGATGGATAGAATACTCAAGAAAGATATCCATGACTTAAGAAGGTTCAAACAAAGATTTCTTTCTCAATTAAATCATAATCATGTCCACTTTGATTATGTAAAAAAAAGCAACAGTTGCTCCGGGCCTAAAATCCAGCTTCCTTATAATTGGTATGTCACAGAAGAAGAGGAAGTTGAGAATATTGATGCAAAGTCAAAAGAAAATAATCTCTCCAATGCAGGGCTTTAA 3423 0.3836 MEKSKSGLKRFWNRLGGRSSSSSSSSCNSFGTIQNQDYRYDVFISFRGPDTRNSFVDHLSSHLLRKGIFVFNDNHKLQKGESISPQLLQAIQHSRLSIIVFSENYASSTWCLDEMAAIAYCKQRSDHTVFPVFYDVDPSHVRHQNGVYKNDFVSHRSKFRNDRDKVRGWERAMTDLANSAGWDLRDKPEFEQIQNIVQAVVKKLNHKFSWFVNDLVGIQPRVQALEDKLRLSSNNDDVQVLGIWGMNGIGKTTHAAVLYDKISHRFDASCFIEDVSKLYRDGGHTAVQREIIYQTLRENTLDMSSPIEISGIVRNRLPNINVFIVLDNVDELEQLENLAIKPKLLLKGSRMVITTTDEHILKVYEGDVLIHKVSLLNEKDACELFCRKAFKSEEQSSGCVELIPEVLTYAQCLPLAIRVLGSFLCAREAVEWRDVLNRLENSPDNKIMNVLQISVDGLNHEEKQIFLHIACFFRGEREDYVKRILDSCGLYPHIGISRLVEKSLITISNEEILMHELLQELGKKMVRDQSPDEPGSWSRIWLHKDFLQVLTTETGTEKVKAIVLDKKEEMSECTVDGLSRMKELTLLILYHTKISGSLEFLSDRLRYLLWHDYPFASLPPYFTASNLVELNMPNSHIKRLWEGLKSCPNLRRIDLSNSKDLTDTPDLSRIINLERLDLSGCTSLSHIHSSIGFLKKLAFLNLRNCCNLVIIDFGRVGNMSSLRVLHLSGCTKLESTPDFTRATHLEYLDMDNCSSLSTMHESIGVLSNLTFLSLRGCIELVSIPTDINSLVSLQTLDLCGCLNLTDLLPRQAFSSHLKSLILLDLSFCNLQEVPDAIGELRCLERLNLQGNKIVSVPSSFRALHCLAYLNLSHCHELKSFDVLPIEVATSGGRYFKTVSGSRDHRSGLYLFDCPKKFGIWELGWLFRLIKEPCNFRCGFDIVNPWEWAVPKRNVDMFGGDSIIRIVECDTIDNWIGFTFCVIFKGNNSDAIARSPHSSFSSTHPFYLSFESEYTEEYFDMRLNLEENGSEHIWIIYISREHCHFVKTGAHITFKAQPSVKIQGWWMDRILKKDIHDLRRFKQRFLSQLNHNHVHFDYVKKSNSCSGPKIQLPYNWYVTEEEEVENIDAKSKENNLSNAGL* 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1428 1140 SUPERFAMILY "Winged helix" DNA-binding domain 445 550 IPR036390 -
Pvu4g1428 1140 Pfam NB-ARC domain 225 451 IPR002182 GO:0043531
Pvu4g1428 1140 Gene3D - 375 459 IPR042197 -
Pvu4g1428 1140 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 33 734 - -
Pvu4g1428 1140 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 733 806 - -
Pvu4g1428 1140 PRINTS Disease resistance protein signature 240 255 - -
Pvu4g1428 1140 PRINTS Disease resistance protein signature 316 330 - -
Pvu4g1428 1140 PRINTS Disease resistance protein signature 410 424 - -
Pvu4g1428 1140 PRINTS Disease resistance protein signature 717 733 - -
Pvu4g1428 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 469 IPR027417 -
Pvu4g1428 1140 Gene3D Ribonuclease Inhibitor 541 712 IPR032675 -
Pvu4g1428 1140 Pfam TIR domain 40 207 IPR000157 GO:0007165
Pvu4g1428 1140 Pfam Leucine Rich Repeat 626 643 IPR011713 -
Pvu4g1428 1140 Gene3D - 7 173 IPR035897 -
Pvu4g1428 1140 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 733 806 IPR044974 GO:0006952
Pvu4g1428 1140 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 734 IPR044974 GO:0006952
Pvu4g1428 1140 Gene3D - 174 369 IPR027417 -
Pvu4g1428 1140 Pfam Leucine rich repeat 823 875 IPR001611 GO:0005515
Pvu4g1428 1140 SMART till_3 39 179 IPR000157 GO:0007165
Pvu4g1428 1140 SUPERFAMILY L domain-like 574 882 - -
Pvu4g1428 1140 Gene3D Ribonuclease Inhibitor 716 810 IPR032675 -
Pvu4g1428 1140 Gene3D Ribonuclease Inhibitor 811 902 IPR032675 -
Pvu4g1428 1140 ProSiteProfiles TIR domain profile. 38 204 IPR000157 GO:0007165
Pvu4g1428 1140 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 182 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1428 Pvu-Chr4 41360953 41368545 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1428 718 880 WRKY Transcription Factor Family AT4G12020 34.146 3.59e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1428 - - vra:106778496 1820.05