Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1411 ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGCTTGGTTGCCATTGGAGGCTCTGAAAGCTTTTACAGTGTATTTGAAACTGAGTTAGCTGATGTTATCCCTGTGGTCAAGACATCCATAGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGAAATAAGAATGGGCTTCTCTTGCCCCATACCACCACAGATCAAGAACTTCAGCATTTGAGGAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGACGAAAGGTTATCTGCTCTGGGGAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCAGGCAACATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGGGGTGGTTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAGCTTTCAACACTTCTTCAGGTTCCATTGGTGGCTGGGACAGTTAACCGGGGCAGTGAAGTGATAGCAGCTGGAATGACAGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTATCTGTAATTGAGAGTGTTTTCAAGCTGAGAGAAGCTCAGCCTAGTGCCATTGTGGACGAGATGAGGAAA 714 0.4426 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFETELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1411 238 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 238 IPR002769 GO:0042256|GO:0043022
Pvu4g1411 238 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Pvu4g1411 238 Gene3D - 1 225 - -
Pvu4g1411 238 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Pvu4g1411 238 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Pvu4g1411 238 Hamap Translation initiation factor 6 [eif6]. 1 238 IPR002769 GO:0042256|GO:0043022
Pvu4g1411 238 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Pvu4g1411 238 SUPERFAMILY Pentein 1 224 - -
Pvu4g1411 238 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 238 - -
Pvu4g1411 238 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1411 Pvu-Chr4 41142838 41146134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1411 1 238 Eukaryotic Initiation Factors Gene Family AT3G55620 92.857 3.12e-170 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1411 K03264 - ming:122062855 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1411 4 41142838 41146134 Pvu7g1175 7 15680395 15684525 PCT