Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1410 ATGACAGCTGGGATGATGGAAAAAGAAGATGATGAGAACTATGGTGATTATGAGCGTGGCATAGAAATTGAAGGTCTGTTGGATGGGAATGAGGAAAATGGAAGGTACTTGTCAGGGTTATCTGACAGAAGCATGGCTCATACAAAGCCACTTCTTGTGAAGAGGATCAACACCACCTCACAGATTGCTATAGTTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGACTATGAGATTTTTTATAATGAAATATTGAAGCATGACTGGAGGTCTAGGAAGAAGTCTCAGACGATCCAATATGTGGTGCTTAAGTGGGGATTTGCCCTTCTTATTGGATTAGGCACTGGATTGGTTGGCTTCTTTAACAGTTATGCAGTTGAGAACATTGCTGGTTTCAAGCTGCTTATGACCACCACTCTCATGTCCAAAAACAGATATCTTGAGGCATTTTTAGCATATGCTGGTGTGAATATATGTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCGGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGAGTGGATGCTCACTATATATTGGCTCCCAGCACCCTTTTTGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGACAGGGTGGATCTCGCAAGTATCACTTGACTTGCAGTTGGCTTAGATTTTTCAAAAACGACCGAGATCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGGGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCACTTCTTTGGAGGACATTCTTCACAACTGCAGTAGTTGCTGTTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGAAAATGTGGGCTATTCGGTGAAGGTGGTCTGATAATGTATGATGTTGGTTCAGCCAATATAACATATAGTGCTGTTGATATATTTGCAGTACTACTTTTGGGAGCCGTTGGTGGAATTCTCGGAAGCATATATAATTACCTTGTCGATAAGGTTGTTCGAACATATAGCATCGTCAATGAAAAAGGTCCAGCTTTCAAAATCTCTCTTGTTGTGACAATTGCTCTTTTGACATCATGTTGTTTTTATTTCTTGCCATGGGTTGCACACTGCATTCCCTGTCCTTCTGATTCAACATCAGCCTGTCCCTCTAGTGATGAGTCTGGAGAATACCAAAACTTTCAATGCCCTCCAGGCTACTACAATGATCTTGCTTCCCTCTTTCTGAACACCAATGATGATGCTATTCGCAATCTGTTCAGTCCCAAGATAATCAAAGAGTTTCATATTTCTAGTCTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGTATTGCTATTCCATCTGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTACCTATGGCCGTCTTGTTAGCCGGATCTTTGAACTGATCACAACACTTGACAGAGGACTCTTTGCCCTACTTGGAGCAGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAGTGTCAAAAACTGTGGCTGACAGCTTCAACAAGGGTGTGTATGATCTAATACTTCAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAAGAATTTAGTTGCAGGTGATGTTGTTTCAGGTCCATTGATTACCTTTTCTGGCATTGAAAAGGTTGGGATTATATGGCATGCTTTGAGTGCTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTCACAGATGCACCAGAATTATGTGGGCTTGTACTGAGGTCTCATTTACTAGTGTTGCTGAAGGAGAAGATTTTTTCAAATGATAAGAATTTCATAGATCAAAGTAGTTTCCAAAGAATTTCTGCTTTGGATTTTGGAAAGGCAGGATCAGGAAAGGGGATCAAACTAGAGGATCTTGATATTGATGAGGAAGATATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCTCCTTACACTGTGGTTGAGACAATGCCACTTGCCAAAGCTGCTATTATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCACCAGTTGTTGGGATTCTAACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTTTACCCTCACATCAAGTCTCAAAAACAGAGTTTAGGGATATCAGTGAAAAACATTCTTTCTTCAGTATTGAAGTGCTGCATTCATTAG 2424 0.4229 MTAGMMEKEDDENYGDYERGIEIEGLLDGNEENGRYLSGLSDRSMAHTKPLLVKRINTTSQIAIVGANLSPIESLDYEIFYNEILKHDWRSRKKSQTIQYVVLKWGFALLIGLGTGLVGFFNSYAVENIAGFKLLMTTTLMSKNRYLEAFLAYAGVNICLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCSWLRFFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRVAIQFCATGKCGLFGEGGLIMYDVGSANITYSAVDIFAVLLLGAVGGILGSIYNYLVDKVVRTYSIVNEKGPAFKISLVVTIALLTSCCFYFLPWVAHCIPCPSDSTSACPSSDESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLFSPKIIKEFHISSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGATYGRLVSRIFELITTLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDLILQIKGLPYLEAHAEPYMKNLVAGDVVSGPLITFSGIEKVGIIWHALSATGHNGFPVIDEPPFTDAPELCGLVLRSHLLVLLKEKIFSNDKNFIDQSSFQRISALDFGKAGSGKGIKLEDLDIDEEDMDMYVDLHPITNASPYTVVETMPLAKAAIIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKSQKQSLGISVKNILSSVLKCCIH* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1410 807 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 787 - -
Pvu4g1410 807 CDD CBS_pair_voltage-gated_CLC_euk_bac 607 774 - -
Pvu4g1410 807 PRINTS Chloride channel signature 173 190 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 PRINTS Chloride channel signature 204 223 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 PRINTS Chloride channel signature 268 287 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 PRINTS Chloride channel signature 493 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 PRINTS Chloride channel signature 525 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 PRINTS Chloride channel signature 543 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 PRINTS Chloride channel signature 581 595 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 Pfam Voltage gated chloride channel 161 575 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu4g1410 807 Gene3D - 595 776 IPR046342 -
Pvu4g1410 807 ProSiteProfiles CBS domain profile. 721 785 IPR000644 -
Pvu4g1410 807 SUPERFAMILY CBS-domain pair 598 772 IPR046342 -
Pvu4g1410 807 SUPERFAMILY Clc chloride channel 85 597 IPR014743 -
Pvu4g1410 807 Pfam CBS domain 725 771 IPR000644 -
Pvu4g1410 807 PRINTS Plant CLC chloride channel signature 289 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu4g1410 807 PRINTS Plant CLC chloride channel signature 303 313 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu4g1410 807 PRINTS Plant CLC chloride channel signature 321 328 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu4g1410 807 PRINTS Plant CLC chloride channel signature 445 461 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu4g1410 807 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 37 787 - -
Pvu4g1410 807 Gene3D Clc chloride channel 96 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1410 Pvu-Chr4 41102379 41109847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1410 10 787 Ion Channels AT5G49890 71.100 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1410 K05016 - gmx:100809070 1268.06