Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1395 ATGGCGACTCAGATGAGTAAGAAGAGAAAGTTTGTGGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTTTGACCCGTGAGTTGGCGGAAGATGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCAATGAGAACCGAGATCATCATCAGAGCCACCAGAACTCAAGCCGTCCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTGACTTCAGTGGTGCAGAAGAGGTTCAAGTTTCCTGATAACAGTGTTGAACTGTATGCGGAAAAGGTCAACAACAGAGGCCTGTGTGCCATTGCTCAGGCCGAGTCTCTTCGTTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGCGAGGTGATTGTCAGTGGAAAACTAAGAGCTCAGAGAGCCAAGTCTATGAAATTCAAGGATGGGTACATGATTTCTTCTGGACAACCTGTGAAGGATTACATTGATTCTGCAGTGAGACATGTTCTCCTAAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGAAAACAGGGTCCCAAAACTCCCCTCCCAGATATTGTCACAATCCACTCTCCAAAGGAGGAGGATGAATATGCTCGTCCTGCTGCTGCCGCCGCTGCTGCTTCTGTTTTACCAACAACTGATATTGAGGTCCCTGTTGCTTGA 729 0.4842 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPDNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYARPAAAAAAASVLPTTDIEVPVA* 243
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1395 242 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Pvu4g1395 242 CDD 40S_S3_KH 15 95 - -
Pvu4g1395 242 Gene3D - 93 231 IPR036419 -
Pvu4g1395 242 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 227 - -
Pvu4g1395 242 Gene3D - 1 91 IPR015946 -
Pvu4g1395 242 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Pvu4g1395 242 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 227 - -
Pvu4g1395 242 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Pvu4g1395 242 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Pvu4g1395 242 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pvu4g1395 242 Pfam KH domain 20 93 IPR004044 GO:0003723
Pvu4g1395 242 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu4g1395 Pvu-Chr4 40904096 40906344 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1395 1 242 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.677 1.26e-153 425
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1395 K02985 - gmx:100499737 425.631