Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1394 ATGGCGACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCGGAACTGAACGAGGTTCTCACGCGTGAGTTGGCGGAGGATGGTTATTCCGGCGTCGAGGTTAGGGTTACGCCTATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGAAGGAGAATTAGGGAACTGACCTCAGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTTTATGCGGAAAAGGTGAACAACAGAGGTCTATGTGCCATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTGATGGAAAGTGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAACTGAGAGCTCAGAGAGCCAAATCCATGAAATTCAAGGATGGGTACATGATTTCTTCTGGACAACCGGTCAAGGATTACATTGACTCTGCAGTGAGACATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTTAAGATCATGCTTGATTGGGATCCCAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCAGATATTGTCACAATTCACACTCCAAAAGAGGAAGAATACAACCACCCTTCTACTGCTCCTGTTTTGGCTCCTGTTTTGGCCAATGATATTGAGGTCCCTGTTGCTTAA 723 0.4855 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYNHPSTAPVLAPVLANDIEVPVA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1394 240 CDD 40S_S3_KH 15 95 - -
Pvu4g1394 240 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 227 - -
Pvu4g1394 240 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 227 - -
Pvu4g1394 240 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Pvu4g1394 240 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Pvu4g1394 240 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Pvu4g1394 240 Pfam KH domain 20 93 IPR004044 GO:0003723
Pvu4g1394 240 Gene3D - 1 91 IPR015946 -
Pvu4g1394 240 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Pvu4g1394 240 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pvu4g1394 240 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Pvu4g1394 240 Gene3D - 93 219 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1394 Pvu-Chr4 40895944 40899737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1394 1 222 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 90.135 1.15e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1394 K02985 - gmx:100499737 439.113