Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1393 ATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCCTTTTGGATCTGTATTCAACAAGTTGGTGAAGGAGCTTGGAGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAATAAATCGAAGCCAATGCAGTACACCTATATAAAACGCAATATATATCTCACTAAGAAGGTCAAGAGATCCCGGTTTGATGACGATGGAATATTCTGTTCCTGTGCTCCTTCAGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGCGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTTATAGAATATGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAACTTCTACTTATGTGAAATTAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCTACTCGGGACATACAAAAGGGCGAACATCTGACTTACGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTTCGTGTAGGCGCAAATTGGGTGTCCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTACATACCAGGTTTATCAGAATGGACGTTTGCAAATTGGAAGTTCTCGTGTTGACCACCGAAAATGCTTACATAATTGCATTGGTGAAGTTATTAGGATAAAACGCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGATTTGATAAATATTCTCGAAAACATTCAATCATGTTTGAGGATGGTCGTGTTGAACTTTATGACATGTCAAAAGAGGACTGGGAACTTGTGAGATAG 1047 0.3983 MPAMKKNSEQTPFGSVFNKLVKELGEPVDFELPDWFNKSKPMQYTYIKRNIYLTKKVKRSRFDDDGIFCSCAPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPAKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAASCRRKLGVRPTKPKMSSDAALKLVTYQVYQNGRLQIGSSRVDHRKCLHNCIGEVIRIKRFEKERFGVIKRFDKYSRKHSIMFEDGRVELYDMSKEDWELVR* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1393 348 Gene3D SET domain 33 271 IPR046341 -
Pvu4g1393 348 ProSiteProfiles AWS domain profile. 64 113 IPR006560 GO:0005634|GO:0018024
Pvu4g1393 348 SMART shorttest3 64 114 IPR006560 GO:0005634|GO:0018024
Pvu4g1393 348 Pfam SET domain 126 231 IPR001214 GO:0005515
Pvu4g1393 348 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 13 273 - -
Pvu4g1393 348 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 276 346 - -
Pvu4g1393 348 PANTHER SET DOMAIN PROTEINS 13 273 - -
Pvu4g1393 348 PANTHER SET DOMAIN PROTEINS 276 346 - -
Pvu4g1393 348 ProSiteProfiles SET domain profile. 115 232 IPR001214 GO:0005515
Pvu4g1393 348 SUPERFAMILY SET domain 37 250 IPR046341 -
Pvu4g1393 348 SMART PostSET_3 238 254 IPR003616 -
Pvu4g1393 348 CDD SET_ASHR3-like 116 254 - -
Pvu4g1393 348 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 292 IPR025787 -
Pvu4g1393 348 ProSiteProfiles Post-SET domain profile. 238 254 IPR003616 -
Pvu4g1393 348 SMART set_7 115 238 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1393 Pvu-Chr4 40887295 40893461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1393 88 253 C2H2 Transcription Factor Family AT2G23740 34.946 1.02e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu4g1393 SET 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1393 - - gmx:100808183 672.159