Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1335 ATGGAAGTGTTGAGTGAGGAATGGTGGAATGAGACGAATGCTTTGTTTTTGGAAGTGTTCCCTAACATCCAAACTCAGACTGCCACCTCGGACAAGATCAATGGTCCTCCAATAATGTTGTCGCTGCCGGAAACAACTCTCCTCTCCGGTCACCCTCATCAAGACATTGTGGAAGCTCCTTTAGTGTTGGCACCGTCTCAGACATGTCGTATCCAGGTTCAGTCCAATAAACGAAAAAGAATTACTTGGACCATGGAAGAGCATAGGTTGTTTTTGGAAGGACTTTACATATACGGGAGAGGATATTGGAAAAAGATTTCATATTACATTCAAACAAAAGATGCAACTCAGGTGGCGAGTCATGCACAAAAATATTTTATGCGTAACAATATATCACAAGAGAAAAAGAAAAGAAAAAGCATTCATGACATGGTGTTAAGTCAACCAATACAAGTACACTTCAATCCTCCTATCAACATGTCCCATCCAGAACATCTAAATCCTGTTAATATGTCTCATCAAATACCACCAATAACAGAAATGATGCAGTCAAATCATATCAACCATATAAATCATCATCCACAATATAATGGAATACATCAAATGATGGAGAGCAATTCTATCAACAACGTAGTATATTCTACACAGTTTCATCAGATGCAATCAAGATGGAGATGA 678 0.385 MEVLSEEWWNETNALFLEVFPNIQTQTATSDKINGPPIMLSLPETTLLSGHPHQDIVEAPLVLAPSQTCRIQVQSNKRKRITWTMEEHRLFLEGLYIYGRGYWKKISYYIQTKDATQVASHAQKYFMRNNISQEKKKRKSIHDMVLSQPIQVHFNPPINMSHPEHLNPVNMSHQIPPITEMMQSNHINHINHHPQYNGIHQMMESNSINNVVYSTQFHQMQSRWR* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1335 225 ProSiteProfiles SANT domain profile. 83 130 IPR017884 -
Pvu4g1335 225 ProSiteProfiles Myb-like domain profile. 75 126 IPR001005 -
Pvu4g1335 225 Pfam PHR domain 73 156 IPR012983 -
Pvu4g1335 225 CDD SANT 82 126 IPR001005 -
Pvu4g1335 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 130 IPR017930 -
Pvu4g1335 225 PANTHER TRANSCRIPTION FACTOR KUA1 73 179 - -
Pvu4g1335 225 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 79 128 IPR006447 GO:0003677
Pvu4g1335 225 PANTHER TRANSCRIPTION FACTOR SRM1 73 179 - -
Pvu4g1335 225 SMART sant 79 128 IPR001005 -
Pvu4g1335 225 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Pvu4g1335 225 Gene3D - 81 131 - -
Pvu4g1335 225 SUPERFAMILY Homeodomain-like 77 128 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1335 Pvu-Chr4 40131721 40132502 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu4g1335 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1335 - - pvu:PHAVU_004G126000g 472.626