Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1324 ATGGCTTCATACAAGATTCTCATCTTCTTTATCCTTATTAACTTCCTCAACTTTGCCATTACTGAACCACAAGATTATTCTCCACTCTACCAATATTGCTCCAGTGAACAAACCATTGACAATACTTCTCTCCAAGTTTATGTCGAAAAGCTCCTTAATAACTTATCTTCTCTATCCTCTGGCCACACCCAATACAACACCAATTTCTCGTGTGCAAACCCCTCAGACTCTATCTATGGCTTGTTCATGTGCAGGGGTGACACTTCACCTCCTCTCTGTCAACAATGCGTTCAAAGTGCAAAAAATAGACTATCCTCGGAGTGTTCTTTGTCCAAAGAATCTGTGACATGGTACGAAGAGTGCATGGTTCGGTATTCCACCAACTACTTCTTCTCCACCGAGACCACAATCCAGTGCAACACTGGCAAGGTGGTCTCAAACCCTGAAAACTTCACGCAGTTATATTTTGAGACCATGAACAAAACAGCAGATGAAGCAGCACATGCTCCTGTTGTTAACAACAATAACAAGATGTTTTCTACGAGGGAAGCACCCGTGTCTGGTTTCCACACCCTTTATTGTCTGGCTCAATGCGCACCAGATCTATCACGCGATGATTGCAGAACCTGCCTCGGTGATGCCATCAAAGATATTCCAAACTCTCCACAATGTTCTGGGGTGAGACTCGGAGGGAAAGTTCTTCATCCCAGTTGTAACATTCGGTATGAATCTTATCCCTTTTATCGTGTTCCACCAACAAACCCTTCACCCAAGCTTGTTCTCGAATCAAAAACCTCTCGTCATGCAGATTTAACGTTTTCAAAAGACCCCTTTTATGTCTCCCACAATTGCTCAACTAACGAAACCCTCACTTCGAATAACACTTTGCAAATAAGCCTCACCACCCTCTTTTCTTACCTATCTTCCAAGGCCACCAACAAGAGATATTACAAAGCTGATGTCAACAGCACAGTTTATGGTCTCTTCATGTGCCGAGGTGACGTTCCCAATGACGTGTGTGAAAAATGCGTTCAAAACGCAGCACATCGAATAGCATTAGATTGCAACTCCTCCCAAGAGGCTATAGTTTGGTACAGCCAGTGCATGCTTCGCTATTCCTTCAGAAAAATTTTCAGAACGGTGGAGAGAAGTCCTGTGTTTTCGGATTTGAATATCACTAGCAGAAACGAGGAACAAAGTTTCTTCAGTGTTACGTTAGCGAAGACGCTAGATAAGGTGGCAGTTATGGCAGGAGATAGTGATGAGAGATTTGGAAAATACTCAACGAAACTGAATGATAAACAAACCCTTTATACTCTTGCTCAATGCACGAAGGATTTGCCTACTGATGATTGCAAGGGTTGCTTGGGAAATTTGATTGGAACAGAAATTCCATGGTCTCGTTTGGGAAGCATAGGGGGAAGAGTTCTATATCCCAGTTGCAATCTCAGGTTTGAATTTCACCAGTTTTACTTCGACGATCCATCTGCAGGACCAATTCAATCAGAAAACAAAGGAATCAATGTACGAAAAATTGTAATAGTAGTTATTGTGCCCACAATTATTTTGGTGAATCTCTTCTTATTGGCTTGGTATTTTCAAAGGAGAAATACAAGAAAGAGCCATACGACTATTCTCAAGGAAAATTTTGGTCATGAAACTGCCACTTTGGAGCCCTTGCACTTCAATTTGACAGCAATTGAGTTAGCAACTAATAACTTTTCCAACGACAACAAGATAGGAAGAGGTGGATTTGGGGAAGTTTATAAGGGTATTCTTCTTGATGGACGACAAATTGCTGTAAAGAGACTCTCAAAAAGTTCTAAACAAGGTGTTGCTCAGTTCAAGACTGAAGTTTTATTGATTGCAAAACTTCAACATAGAAATCTAGTAGAGTTCATTGGTTTTTGTCTTGAAGAAGAAGAAAAGATACTTATATATGAATACGTTCCAAACAAGAGTCTTGATCACTTTTTATTTGATTCTCAACCACAAAAGTTGTTAAGTTGGTGTGAACGTTATAAAATTATAGGAGGTGTTGCTCGAGGAATTGTTTATTTACATGAACATTCTCGACTTAAGGTTATACATCGTGATCTTAAACCGAGCAATATTCTACTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGCATTGCTAAAATTGTTGAAATTAGTCAAGACCAAGAAAGTACAGATTTAATTGTTGGAACATGTGGTTATATGTCTCCAGAGTATGCAATGTTCGGACAATTTTCTGAAAAGTCAGATGTCTTTAGTTTTGGAGTAATGATTTTAGAGATTATTACGGGAAGAAAGAATATGCATTCAAGTGAACCACGTCGTATAGCTGACGGTCTCCTAAATTATGTTTGGAAACAATGGAGGGATCAAACACCATTAAGCATATTGAATTCAAATATTAAGGAAAATTATGCTGAAATTGAAGTTATAAAGTGTATTCAAATTGGTTTATTGTGTGTTCAAGAAAATCCCGATGTTAGGCCAACAATGGTAACAATTGTTTCATATCTTGATGGTCATTTTAGCGAATTACCAACTCCACAAAAGCCTGCATTTTTCTTGCATGGAAGAATGGATTCAAAATCTATTGGAAGGAAATCAAGTTCTAGGAAATCTATGAATATTTCTACACCATTATCAATCAATGAAATGTCTACAAGTGAATGTATTCCTCGTTAA 2706 0.3858 MASYKILIFFILINFLNFAITEPQDYSPLYQYCSSEQTIDNTSLQVYVEKLLNNLSSLSSGHTQYNTNFSCANPSDSIYGLFMCRGDTSPPLCQQCVQSAKNRLSSECSLSKESVTWYEECMVRYSTNYFFSTETTIQCNTGKVVSNPENFTQLYFETMNKTADEAAHAPVVNNNNKMFSTREAPVSGFHTLYCLAQCAPDLSRDDCRTCLGDAIKDIPNSPQCSGVRLGGKVLHPSCNIRYESYPFYRVPPTNPSPKLVLESKTSRHADLTFSKDPFYVSHNCSTNETLTSNNTLQISLTTLFSYLSSKATNKRYYKADVNSTVYGLFMCRGDVPNDVCEKCVQNAAHRIALDCNSSQEAIVWYSQCMLRYSFRKIFRTVERSPVFSDLNITSRNEEQSFFSVTLAKTLDKVAVMAGDSDERFGKYSTKLNDKQTLYTLAQCTKDLPTDDCKGCLGNLIGTEIPWSRLGSIGGRVLYPSCNLRFEFHQFYFDDPSAGPIQSENKGINVRKIVIVVIVPTIILVNLFLLAWYFQRRNTRKSHTTILKENFGHETATLEPLHFNLTAIELATNNFSNDNKIGRGGFGEVYKGILLDGRQIAVKRLSKSSKQGVAQFKTEVLLIAKLQHRNLVEFIGFCLEEEEKILIYEYVPNKSLDHFLFDSQPQKLLSWCERYKIIGGVARGIVYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGIAKIVEISQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMILEIITGRKNMHSSEPRRIADGLLNYVWKQWRDQTPLSILNSNIKENYAEIEVIKCIQIGLLCVQENPDVRPTMVTIVSYLDGHFSELPTPQKPAFFLHGRMDSKSIGRKSSSRKSMNISTPLSINEMSTSECIPR* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1324 901 Pfam Protein kinase domain 575 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1324 901 SUPERFAMILY Protein kinase-like (PK-like) 558 868 IPR011009 -
Pvu4g1324 901 SMART serkin_6 574 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1324 901 ProSiteProfiles Gnk2-homologous domain profile. 383 490 IPR002902 -
Pvu4g1324 901 ProSiteProfiles Gnk2-homologous domain profile. 132 247 IPR002902 -
Pvu4g1324 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Pvu4g1324 901 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Pvu4g1324 901 CDD STKc_IRAK 580 848 - -
Pvu4g1324 901 Pfam Salt stress response/antifungal 139 245 IPR002902 -
Pvu4g1324 901 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Pvu4g1324 901 Pfam Salt stress response/antifungal 396 486 IPR002902 -
Pvu4g1324 901 Pfam Salt stress response/antifungal 284 373 IPR002902 -
Pvu4g1324 901 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 508 892 - -
Pvu4g1324 901 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 267 492 - -
Pvu4g1324 901 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 254 - -
Pvu4g1324 901 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Pvu4g1324 901 Gene3D Phosphorylase Kinase; domain 1 534 649 - -
Pvu4g1324 901 Gene3D - 277 376 IPR038408 -
Pvu4g1324 901 Gene3D - 386 490 IPR038408 -
Pvu4g1324 901 Gene3D - 26 130 IPR038408 -
Pvu4g1324 901 Gene3D - 132 247 IPR038408 -
Pvu4g1324 901 PIRSF SRK 483 898 IPR024171 GO:0004674
Pvu4g1324 901 PIRSF SRK 83 210 IPR024171 GO:0004674
Pvu4g1324 901 ProSiteProfiles Gnk2-homologous domain profile. 278 377 IPR002902 -
Pvu4g1324 901 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 254 - -
Pvu4g1324 901 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 508 892 - -
Pvu4g1324 901 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 267 492 - -
Pvu4g1324 901 ProSiteProfiles Protein kinase domain profile. 574 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1324 901 Gene3D Transferase(Phosphotransferase) domain 1 650 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1324 Pvu-Chr4 40063721 40067224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1324 272 901 Receptor kinase-like Gene Family AT4G05200 42.337 1.03e-169 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu4g1324 Pkinase 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1324 - - gmx:100807113 1069.3