Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1321 ATGATTCAAGAGCAGCACATCCATAGCACATCCATGGCTTCCTGTAACATTTTCTTCATCTTAATACTTGTTAACTTCCTCACTTTTGAAACTACTCAGGCAGAGACCGTTTCCGACCCTGTCTATCTATACCACGATTGTTCTGGGGGCAACACTACCGTTGGCAGCACCTTCCAATCCAATCTCAAAACCCTACTCTCTTCCTTATCAGATAACGCCTCCGGCAACAACGGATTCTACAACAACACAGTCCCTTCACAAAATTCCTCGGACTCTGCCTTTGGACTTTTCATGTGCAGGGGTGAGGTCCCTTCTCAGCTTTGTCAACATTGTGTCCAAAATGCAACCAGGCGATTATCCTCAGACTGCCCGTTGGCCAAGCAAGCTGTGATTTGGTACGATGAGTGCACCGTTCGTTACTCCAACACCTCGTTCTTCTCTACTGTCTCCCTTAGACCTAGGGTTGGCCTGTTGAATACTGGTAATATCTCAAACCAGGAAAGTTTCATGGAATTATTGTTCCAGACCATGAACAAAACTGCAGATGCTGCTGCTAGTGCTGTTGAAAACAAGTTTGCAATAAACCAAGCAATTATTTCTGAATTTCAGAGTCTTTATTGTCTAGCTCAGTGTACTCCAGACTTGTCACTCATTGATTGCAGAAGGTGTTTGAGTGGAGCAATAGGGGACCTACCATGGTGCTGCGAAGGGAAGCAAGGAGGGAGAGTTCTGTATCCAAGTTGTAATGTTAGATATGAACTCTACCCTTTCTATCGCTCCACAGAAGCACCTGAAGATTCAGAGTTATCAGAAGATCCCCTTTATCTAAGTCACAATTGCTCAACTAATGTAACTTCTGACAGCAATTTCAAAGTACATCTCAGCACCCTCTTCTCTTACATGTCTTCCAATGCCACCAACCAAATGGATTACAAAGATGGTGTTGAAAACACTGTGTATGGCCTCTTCATGTGCCGAGGTGACCTTCCCTCACGCCTCTGTCAACAGTGTGTCCTCAACGCAACGCACCGAATATTTTCAGAGTGCAATTCATTTCAAGAGGCTGTAATTTGGTACAGCCACTGCATGCTTCGCTATTCCTATCGTCATTTCTTCTCAAAAGTGGAAAAAAGTCCAACTTTTCAGAGTCTTATCAATACCTTCAACGATGATTTGTTGGGTGATGATTGCATGCATTGTCTGGAAGATATAAATAAAAATATGCCATTCTCTCAACTGGGAAACACAGGGGGAAGAATTCTATATCCTAGTTGCAATCTCAGGTATGAATTTTTCCAATTTTACAGGGATCCTCAGCTACAGGGGCCTGGTAATTCTTCTCCACCAGTTCTTAAAGAAAAAGGAAAAAGAGGATTGCGAACAATTATCTCGATTGTTCTACCCACTACTGTTTCAGTGATACTCTTCATTTTCGTCTACTATTTGATAAAGAGAAAAGCAAGAAGGAGTGCTAAGTCTATTCTTAGAGAAAATTTTGGTTACGAAAGTGCCACTTTAGAGCCATTGCAATTCAGTTTGGCAGTAATTGAAGCAGCTACCAACAATTTTTCAAATGAGAATAAGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTTTTGATGGCCGACAAGTAGCAGTGAAAAAACTCTCAACAAGTTCTAAACAAGGAGTAAATGAGTTTAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTTGTGACATTCATTGGCTTTTGTCTGAAAGAAGAACACAAAATACTTATTTATGAATATGTGCCCAACAAGAGCCTTGACTATTTTTTATTTGATTCTCAAAGAACACATTTGTTAAGTTGGTCTCAACGTTACAATGTAATTGGAGGAGTTGCTCGAGGAATTCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATCTTAAGCCTAGCAATATTTTATTAGATGAAAATATGATTCCGAAAATTTCAGATTTTGGTCTTGCTAGGATTGTTAAAATAAATCAAGACGAGGGGAATACAATTAGAATTGTTGGAACATATGGTTATATGTCTCCGGAATATGCAATGTTTGGACAATTTTCAGACAAATCAGATGTTTTTAGCTTTGGAGTGATGGTTCTAGAGATTATTACTGGAAAAAGGAATTCAACTTCTTATGATCAACCACATGGAGTTGCTAATAGCCTTTTGAGTTATGTGTGGAGGCAATGGAGGGATGAGACAATATTAAGCATATTAGACCCAAGTATTAAAGAAAAATATTCAGAACAGGAAGTTTTGATATGCATTCAAATTGGTTTATTATGTGTGCACCAAAATCCTCATGCTAGACCATCAATGGTGAAGGTTGTTTCATATTTTTGCAAACATTTAGTTGAATTACCAAGACCAGAGGAACCCACATTTTTCTTGCATGGCACAATGGATTCAAAAGAATCAAGTTCTAGACCTTCTTCTAGTGGCTGCATTCCATTATCTGTTAATGAAATGCCAACAAGTGAATTTCTTCCTCGATAG 2544 0.3907 MIQEQHIHSTSMASCNIFFILILVNFLTFETTQAETVSDPVYLYHDCSGGNTTVGSTFQSNLKTLLSSLSDNASGNNGFYNNTVPSQNSSDSAFGLFMCRGEVPSQLCQHCVQNATRRLSSDCPLAKQAVIWYDECTVRYSNTSFFSTVSLRPRVGLLNTGNISNQESFMELLFQTMNKTADAAASAVENKFAINQAIISEFQSLYCLAQCTPDLSLIDCRRCLSGAIGDLPWCCEGKQGGRVLYPSCNVRYELYPFYRSTEAPEDSELSEDPLYLSHNCSTNVTSDSNFKVHLSTLFSYMSSNATNQMDYKDGVENTVYGLFMCRGDLPSRLCQQCVLNATHRIFSECNSFQEAVIWYSHCMLRYSYRHFFSKVEKSPTFQSLINTFNDDLLGDDCMHCLEDINKNMPFSQLGNTGGRILYPSCNLRYEFFQFYRDPQLQGPGNSSPPVLKEKGKRGLRTIISIVLPTTVSVILFIFVYYLIKRKARRSAKSILRENFGYESATLEPLQFSLAVIEAATNNFSNENKIGKGGFGEVYKGILFDGRQVAVKKLSTSSKQGVNEFKNEVLLIAKLQHRNLVTFIGFCLKEEHKILIYEYVPNKSLDYFLFDSQRTHLLSWSQRYNVIGGVARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVKINQDEGNTIRIVGTYGYMSPEYAMFGQFSDKSDVFSFGVMVLEIITGKRNSTSYDQPHGVANSLLSYVWRQWRDETILSILDPSIKEKYSEQEVLICIQIGLLCVHQNPHARPSMVKVVSYFCKHLVELPRPEEPTFFLHGTMDSKESSSRPSSSGCIPLSVNEMPTSEFLPR* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1321 847 Gene3D - 39 145 IPR038408 -
Pvu4g1321 847 Gene3D - 274 371 IPR038408 -
Pvu4g1321 847 Gene3D - 376 434 IPR038408 -
Pvu4g1321 847 Gene3D - 154 257 IPR038408 -
Pvu4g1321 847 MobiDBLite consensus disorder prediction 817 836 - -
Pvu4g1321 847 Gene3D Phosphorylase Kinase; domain 1 484 598 - -
Pvu4g1321 847 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 452 821 - -
Pvu4g1321 847 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 31 264 - -
Pvu4g1321 847 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 268 383 - -
Pvu4g1321 847 ProSitePatterns Protein kinases ATP-binding region signature. 529 552 IPR017441 GO:0005524
Pvu4g1321 847 ProSiteProfiles Gnk2-homologous domain profile. 151 257 IPR002902 -
Pvu4g1321 847 ProSiteProfiles Gnk2-homologous domain profile. 40 145 IPR002902 -
Pvu4g1321 847 Pfam Protein kinase domain 524 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1321 847 Pfam Salt stress response/antifungal 47 142 IPR002902 -
Pvu4g1321 847 Pfam Salt stress response/antifungal 280 367 IPR002902 -
Pvu4g1321 847 Pfam Salt stress response/antifungal 162 255 IPR002902 -
Pvu4g1321 847 Gene3D Transferase(Phosphotransferase) domain 1 599 803 - -
Pvu4g1321 847 SMART serkin_6 523 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1321 847 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 268 383 - -
Pvu4g1321 847 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 264 - -
Pvu4g1321 847 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 452 821 - -
Pvu4g1321 847 SUPERFAMILY Protein kinase-like (PK-like) 506 823 IPR011009 -
Pvu4g1321 847 ProSiteProfiles Gnk2-homologous domain profile. 272 371 IPR002902 -
Pvu4g1321 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Pvu4g1321 847 ProSiteProfiles Protein kinase domain profile. 523 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1321 847 CDD STKc_IRAK 529 798 - -
Pvu4g1321 847 MobiDBLite consensus disorder prediction 817 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1321 Pvu-Chr4 39995753 39999358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1321 269 847 Receptor kinase-like Gene Family AT4G05200 40.091 1.43e-157 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu4g1321 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1321 - - gmx:100798426 1136.71