Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1315 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCTCCAACCACCAGCAGCACAAAATCTCCCAAGATCTGATTCTGGATGATTATGCTTCACTGGATGACAATGTTTCTGGGAAAAAATTCTCTAGAAGCCAACCAGAGAATCTTTTCTGTGAGGAAAATAAAAAGAATCATGACTCTAACGAACATGTGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGACTACCTGCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGGTGCCAAGAGAGATGAACTGAAGAAACTTTCCAGTCATAGCAATATGGAAATAAGCCATGAGGGCTTGCATACATCTTGCAACTTTACTGTCCACGAGAATAATGGTGTTATAGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAAGCCTAAAGTTTCCAAGTTACTACAATTGCTGATTCAAGAAGGTCATGAAGTTGTTAGTTGCCTTTCATCAGAAGTCAATGGCAGATTGCTCCACAGTGTGCAGTGTGAGGTAAACCATTCCAACTGTGTAGATCTATCTGAGCTGAGAAGGAAAGTTTCCAAAGCATTTCCATCATTTAAATGTTCTGATTAA 726 0.4022 MFPLQRGNELVIQFSNSSNHQQHKISQDLILDDYASLDDNVSGKKFSRSQPENLFCEENKKNHDSNEHVKKMIHKEIERQRRQEMTTCYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGAKRDELKKLSSHSNMEISHEGLHTSCNFTVHENNGVIGIEITSGFREEKPKVSKLLQLLIQEGHEVVSCLSSEVNGRLLHSVQCEVNHSNCVDLSELRRKVSKAFPSFKCSD* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1315 241 Coils Coil 118 138 - -
Pvu4g1315 241 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Pvu4g1315 241 CDD bHLH_AtORG2_like 70 143 - -
Pvu4g1315 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Pvu4g1315 241 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 239 - -
Pvu4g1315 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 145 IPR036638 GO:0046983
Pvu4g1315 241 SMART finulus 75 127 IPR011598 GO:0046983
Pvu4g1315 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 239 IPR015660 GO:0003700|GO:0006357
Pvu4g1315 241 Gene3D - 60 150 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1315 Pvu-Chr4 39887949 39889639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1315 66 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 44.509 4.09e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu4g1315 HLH 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1315 - - gmx:100780888 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1315 4 39887949 39889639 Pvu4g1315 4 39887949 39889639 ECH
Pvu4g1315 4 39887949 39889639 Pvu7g0657 7 5660789 5661887 PCT