Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1314 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCACCAACCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAGCGTTCAGCCTCAGATCATGTGCATGAGGCTATGAATTATATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGCAAAGAGGGATGCCTTATTGAAGGTGTCTAATTTCAGCAGCACTGGTCCTGAGAATGAAAGCTCTTGTACTACTCATCATCTTCCACCTTTGGTTTTTGTTCATCCTTTCCCTGGAGGCCTTGAGATTATGTGCAGTTATAGCTTCAGGAGAAGTGTGTTTCCCATGTCAAGATTATTGGACATTCTACATAAAGAAGGACTTAGCGTGGTTAGCACTACTTCCATCAGAAGAGATGGTAGATTCATACACACCATACAATCAGAGAATCCCAATCATCCTAATATGATTGATACTGATTACTCTGAACTGCAAATAAAGCTTATGGAGGCATTATCATCTTCAATTGACGATTCAATTTCATGA 558 0.3943 MDENKKWMHKETERQRRQEMGKLCTNLRSLLPLEYIKGKRSASDHVHEAMNYINHLQDKVKQLQAKRDALLKVSNFSSTGPENESSCTTHHLPPLVFVHPFPGGLEIMCSYSFRRSVFPMSRLLDILHKEGLSVVSTTSIRRDGRFIHTIQSENPNHPNMIDTDYSELQIKLMEALSSSIDDSIS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1314 185 PANTHER TRANSCRIPTION FACTOR 1 180 - -
Pvu4g1314 185 Coils Coil 46 73 - -
Pvu4g1314 185 CDD bHLH_AtORG2_like 5 75 - -
Pvu4g1314 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Pvu4g1314 185 SMART finulus 10 62 IPR011598 GO:0046983
Pvu4g1314 185 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Pvu4g1314 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Pvu4g1314 185 Gene3D - 1 78 IPR036638 GO:0046983
Pvu4g1314 185 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 180 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1314 Pvu-Chr4 39857777 39859294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1314 5 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.045 1.11e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu4g1314 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1314 - - pvu:PHAVU_004G124200g 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1314 4 39857777 39859294 Pvu4g1314 4 39857777 39859294 ECH
Pvu4g1314 4 39857777 39859294 Pvu7g0658 7 5677610 5679322 PCT