Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1313 ATGAACTTCAAACAATACTGTTGTTTCCTCTTAGATGAAGGGCAAAGCAAAATTCAGATTGCTAAGAAGAAGAACAGTAGGGGTTATCCATGGGAAATGTATACCTTGAAGGAGTTGCTTAGAGCAACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAGGCGTTCAGATTGCAGTGAAGCGATTGAAGACAATGACTGCTAAGGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATTTGTTGGGATTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTAATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCTAAGGAATGTCAGTTAGATTGGCCAAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTAGTGTATTTGCACCATGAGTCAACTCCTCACATCATACATAGAGATATAAAGGCGAGTAATGTTCTTCTGGACTCTGAATTCCAATCCAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATCTTACCACAAAGGTTAAAGGCACCCTAGGATATTTGGCACCAGAATATGCCATGTGGGGAAAAGTTTCTGAGAGCTGTGATGTCTACAGCTTTGGAATTTTACTGTTGGAGATTATCAGTGCCAAGAAACCAATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATCGTTCAATGGGCCACACCATATGTCAACAAAGGTCTCTTCAGCAACATTGCAGATCCAAAATTGAAGGGCAAATTTGATTTGCAGCAACTGAAAAATGTGATCACAATAGCTCTTAGATGCACTGATACCAGCGCGGATAAGAGACCTAACATGAAAGAGGTGGTGGAATGGCTCAAGAATGGTGTAGGCAGCACTTAG 975 0.4123 MNFKQYCCFLLDEGQSKIQIAKKKNSRGYPWEMYTLKELLRATNNFHQDNKIGEGGFGSVYFGRTSKGVQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWPRRMSIAIGAAEGLVYLHHESTPHIIHRDIKASNVLLDSEFQSKVADFGFAKLVPDGVTHLTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWATPYVNKGLFSNIADPKLKGKFDLQQLKNVITIALRCTDTSADKRPNMKEVVEWLKNGVGST* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1313 324 PANTHER - 4 322 - -
Pvu4g1313 324 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1313 324 SUPERFAMILY Protein kinase-like (PK-like) 28 319 IPR011009 -
Pvu4g1313 324 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1313 324 PIRSF ILK 13 321 - -
Pvu4g1313 324 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1313 324 Gene3D Phosphorylase Kinase; domain 1 11 121 - -
Pvu4g1313 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Pvu4g1313 324 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Pvu4g1313 324 PANTHER OS01G0750732 PROTEIN 4 322 - -
Pvu4g1313 324 CDD STKc_IRAK 52 319 - -
Pvu4g1313 324 Gene3D Transferase(Phosphotransferase) domain 1 122 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1313 Pvu-Chr4 39840910 39843278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1313 15 313 Trihelix Transcription Factor Family AT1G68690 42.628 1.13e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Pvu4g1313 Pkinase 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1313 - - gmx:100800710 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1313 4 39840910 39843278 Pvu7g0659 7 5690743 5692743 PCT