Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1307 ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATAAACCGTCAAGTAACGTTCTCAAAGCGCAGAAGTGGGTTGCTGAAGAAGGCATTTGAGCTTTCTGTGCTTTGTGATGCAGAAGTTGCCCTTATCATCTTTTCTAGCCCTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCGTTGAGAGATATCGTCAATGTCGTTACAGCAAGTTACAGACTGGTGATTCATCGGAACTCGAATCACAGAGTTCATATCATGAATTCTTGAAATTAAGAGCGAAATACGAATCTCTTGAGCGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCTCTTAGCTTTAAAGAATTGCAGAGCCTTGAGAAACAACTAGACATTACTCTTGCACTAACTCGACAGCAGCAAACAAAGAAACTCATGGCACGAGCTGATGAATTACGCGAAAAGGTGCGCAAATTGGAAGATCTTAACAAGCAATTGGAATCCAAGGAAAAAGATGAATTCTCAAGCCTCATCCTTGACAATAACAATTTTTTTCAATTGCATGCAACAAAAGCCGATCAATTTGAATCTGGAACAACACTAGACACATGTAAAAACATCTAA 627 0.3987 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSPGKLFQYSSTDINKIVERYRQCRYSKLQTGDSSELESQSSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKVRKLEDLNKQLESKEKDEFSSLILDNNNFFQLHATKADQFESGTTLDTCKNI* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1307 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 182 - -
Pvu4g1307 208 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu4g1307 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pvu4g1307 208 Coils Coil 143 173 - -
Pvu4g1307 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu4g1307 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Pvu4g1307 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu4g1307 208 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pvu4g1307 208 PANTHER MADS BOX PROTEIN 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1307 Pvu-Chr4 39560687 39573167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1307 1 170 MADS-box Gene Family AT2G45650 57.059 6.39e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu4g1307 K-box 9.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1307 K09264 - gmx:100779279 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1307 4 39560687 39573167 Pvu4g1307 4 39560687 39573167 ECH
Pvu7g0665 7 5765965 5766333 Pvu4g1307 4 39560687 39573167 PCT