Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1299 ATGGGTAAGGGGGGAATGTCCATTGATGATCATGGAGAAGACAAAGAAGAGAATATGGCTGCTTGGCTTCTTGGTATAAACAATCTCAAGATTCAACCTTTCAAGCTTCCTACTTTAGGACCCTATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAGACACTGAAGTGTGCACACTTTATAGTTAAGGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTAAAGAGTTTTGTGCCTGGTGACCGTGTTGCGCTTGAACCTGGAATCACTTGCTGGCGATGCGACCACTGTAAACAGGGTCGATACAATTTGTGTGATGATATGAAGTTTTTTGCTACTCCACCAGTTCATGGTTCCCTGGCTAATCAGATAGTGCATCCTGCAAACCTATGTTTTAAGCTTCCAGACAACGTGAGCCTAGAGGAGGGGGCCATGTGTGAACCCTTAAGTGTTGGTATTCATGCTTGTAGGAGAGCTAATATTGGACCAGAAGCAAATGTGTTGGTCATGGGAGCTGGACCCATAGGACTTGTTACACTGCTTGCAGCTCGCGCTTTTGGAGCACCCAAGATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAATCTCTTGGTGCAGATGATGTTGTTAAAGTCTCAACAAACATTCAGGATGTGGCTGAAGATATTGTGCAGATACAAAAGGCTATGGGAGCTGCTATAAATGTTACCTTTGATTGTGCTGGTTTTGACAAAACCATGTCTACAGCACTGGGTGCTACTCAGCCTGGTGGCAAAGTTTGCCTAGTGGGAATGGGACATTCTGAAATGACTGTCCCACTCTCCCCTGCAGCAGCAAGGGAAGTTGATGTGATTGGAGTTTTTCGCTATATGAACACATGGCCTCTTTGTCTTGAGTTTATAAGGAGTGGCAAAATCGATGTAAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAAAAGGAAGTGGAAGAAGCCTTTGAAACAAGTGCTCGTGGTGGTAATGCCATCAAGGTCATGTTCAACCTTTAG 1095 0.4429 MGKGGMSIDDHGEDKEENMAAWLLGINNLKIQPFKLPTLGPYDVRVRMKAVGICGSDVHYLKTLKCAHFIVKEPMVIGHECAGIIEEVGSQVKSFVPGDRVALEPGITCWRCDHCKQGRYNLCDDMKFFATPPVHGSLANQIVHPANLCFKLPDNVSLEEGAMCEPLSVGIHACRRANIGPEANVLVMGAGPIGLVTLLAARAFGAPKIVIVDVDDYRLSVAKSLGADDVVKVSTNIQDVAEDIVQIQKAMGAAINVTFDCAGFDKTMSTALGATQPGGKVCLVGMGHSEMTVPLSPAAAREVDVIGVFRYMNTWPLCLEFIRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1299 364 Pfam Zinc-binding dehydrogenase 192 322 IPR013149 -
Pvu4g1299 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 328 IPR036291 -
Pvu4g1299 364 PANTHER SORBITOL DEHYDROGENASE 13 364 - -
Pvu4g1299 364 CDD sorbitol_DH 20 363 IPR045306 GO:0016616
Pvu4g1299 364 Gene3D - 169 309 - -
Pvu4g1299 364 SUPERFAMILY GroES-like 18 190 IPR011032 -
Pvu4g1299 364 SMART PKS_ER_names_mod 25 362 IPR020843 GO:0016491
Pvu4g1299 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Pvu4g1299 364 Pfam Alcohol dehydrogenase GroES-like domain 43 152 IPR013154 -
Pvu4g1299 364 Gene3D - 27 351 - -
Pvu4g1299 364 PANTHER L-IDONATE 5-DEHYDROGENASE 13 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1299 Pvu-Chr4 39418969 39422478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1299 31 297 Monolignol Biosynthesis Gene Families AT4G37980 28.058 2.80e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1299 K00008 - gmx:100791559 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1299 4 39418969 39422478 Pvu4g1299 4 39418969 39422478 ECH