Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1298 ATGGACGTGGACGGGGGCAGCAAGCGTGTGTACAACCGTCTTGGTGGGGACGCGAAGCACCAGAAAGTGTGTTTCCACTGGCAAGCGGGCAAGTGCAATCGCTACCCGTGCCCCTTCCTGCACAGCGAATTGCCCGCATCTTCCCACGCCAACGGGGCCTCCTCGAAGCGTGCGCACGACAATTCGGGCTTGTCGGGATTCTCGGGCCAGCGCGGACGCTCCAATTTCAACAACTCGTGGGGCCGTGGCGGGGGGCGCGGCGGCGGCGGCGGTAGAGGGGTGGTGGTGAAGGCGGAAAAAGTTTGCAATTATTGGATTCAGGGGAATTGTAGTTATGGAGAGAGGTGTAAGTTCCTTCACTCTTGGAGAGTGGGAGATGGGTTTTCCTTGCTGACACAGCTCGAAGGGCATCAGAAGGCTGTGAGTGCAATCGCCTTTCCCTCTGGTTCAGATAAGCTGTATACTGGAAGCACTGATGAGACGGCAAGGATTTGGGACTGTCAGTCTGGAAAGTGCGTAGGTGTCATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACTCAAAATTTAGTGGAGCTAAGTCTAAATGGTCCCGTTGGACAAGTTTATGCTCTTGTTGTAAACAATGATATGCTTTTTGCTGGTACACAGGATGGATCTATATTGGTATGGAAGTTTAATGTAGGTAACAACTGCTTCGAGCCAGCTGCATCACTTAAGGGCCATTCTCGCGGTGTTGTTTCGTTAGTTGTTGGTGCTAGTAGGCTTTACTCTGGGTCAATGGACAATACAATAAAAGTATGGAACCTTGAAACCTTGCAGTGTATACAGACACTAACAGAGCACACATCTGTTGTGATGTCTGTTCTCTGCTGGGACCAATTCCTTCTATCTTGTTCCTTGGACAAAACTGTGAAGGTATGGTATGCTACAGAAAGCGGAAACTTGGAAGTGACATATACTCACAATGAAGAACATGGTATACTTACCCTATGTGGGATGCATGACTCACAAGGCAAACCCATTTTGTTGTGTGCTTGCAATGATAATACTGTGCGCCTCTATGATCTGCCATCATTTGCAGAGAGGGGTAAGATATTAACTAAACAAGAGGTACGAGCAATCCAGATGGGCCCTAACGGCATATTCTTCACCGGAGATGGTACTGGTGAAGTAAGAGTGTGGAATTGGACAGCAGAGGCAACCACTACCGTCCAATAA 1275 0.4918 MDVDGGSKRVYNRLGGDAKHQKVCFHWQAGKCNRYPCPFLHSELPASSHANGASSKRAHDNSGLSGFSGQRGRSNFNNSWGRGGGRGGGGGRGVVVKAEKVCNYWIQGNCSYGERCKFLHSWRVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLVELSLNGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVGNNCFEPAASLKGHSRGVVSLVVGASRLYSGSMDNTIKVWNLETLQCIQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDSQGKPILLCACNDNTVRLYDLPSFAERGKILTKQEVRAIQMGPNGIFFTGDGTGEVRVWNWTAEATTTVQ* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1298 424 PANTHER - 1 422 IPR044715 -
Pvu4g1298 424 MobiDBLite consensus disorder prediction 48 81 - -
Pvu4g1298 424 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Pvu4g1298 424 SMART c3hfinal6 98 122 IPR000571 GO:0046872
Pvu4g1298 424 Pfam WD domain, G-beta repeat 254 287 IPR001680 GO:0005515
Pvu4g1298 424 Pfam WD domain, G-beta repeat 130 166 IPR001680 GO:0005515
Pvu4g1298 424 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Pvu4g1298 424 ProSiteProfiles Zinc finger C3H1-type profile. 97 123 IPR000571 GO:0046872
Pvu4g1298 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 134 166 - -
Pvu4g1298 424 Gene3D - 252 424 IPR015943 GO:0005515
Pvu4g1298 424 MobiDBLite consensus disorder prediction 48 89 - -
Pvu4g1298 424 PRINTS G protein beta WD-40 repeat signature 153 167 IPR020472 -
Pvu4g1298 424 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Pvu4g1298 424 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Pvu4g1298 424 SUPERFAMILY CCCH zinc finger 98 121 IPR036855 GO:0046872
Pvu4g1298 424 Gene3D - 121 251 IPR015943 GO:0005515
Pvu4g1298 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 296 IPR001680 GO:0005515
Pvu4g1298 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Pvu4g1298 424 Gene3D - 16 120 - -
Pvu4g1298 424 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Pvu4g1298 424 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 422 - -
Pvu4g1298 424 Pfam Zinc finger domain 102 120 - -
Pvu4g1298 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
Pvu4g1298 424 SUPERFAMILY WD40 repeat-like 128 416 IPR036322 GO:0005515
Pvu4g1298 424 SMART WD40_4 377 414 IPR001680 GO:0005515
Pvu4g1298 424 SMART WD40_4 290 327 IPR001680 GO:0005515
Pvu4g1298 424 SMART WD40_4 206 243 IPR001680 GO:0005515
Pvu4g1298 424 SMART WD40_4 331 374 IPR001680 GO:0005515
Pvu4g1298 424 SMART WD40_4 127 166 IPR001680 GO:0005515
Pvu4g1298 424 SMART WD40_4 250 287 IPR001680 GO:0005515
Pvu4g1298 424 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1298 Pvu-Chr4 39407374 39416501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1298 229 414 Miscellaneous Gene Families AT5G08390 27.041 1.21e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu4g1298 WD40 8.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1298 - - gmx:100775542 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1298 4 39407374 39416501 Pvu4g1298 4 39407374 39416501 ECH