Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1297 ATGGCTGTTGCCACGAGCAACAGCAGCAACTATGAACCTTGTACTTCATACAATTGTTACAAAGTAGCAGGCTTGACTGAGACCATATTAGACACAAGTCAAGTCTATAATCTAAAAGATCGGTACATTCTCGGCGAGCAATTGGGTTGGGGGCAGTTTGGTGTCATAAGGGCCTGTTCTGACAAGTTAACAGGAGAGGTTCTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGATGATTTGAGAAGTGTCAAACTTGAGATAGAGATAATGGCTAGGCTATCTGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGTTTTGTTCACTTGGTGATGGAGCTTTGTGCTGGAGGAGAGCTTTTTCACCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTCTCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCCGAGAATATTCTCTTAGCAACAAGATCGTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCTGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGAAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCTTGAAGTTTCCATTGGAACCTTGGGATCGAATTTCTGAATCAGCTAAGGATTTGATCAGGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTGGATCATTGCTGGATGGAAAGCAACCAAACAAATCCAGAACAACTAAGTGAAAATCAGATCCAAAGTTGCGAAGAATGGGATGTTGGTGGCAGCTCATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATCAGCTTTGGCGCTGGCACTCCTACTTGTGATGCTCAATCGCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACGCCATGTCTACTATCTGGTGGGTTTTCATTCAAGAGTGTAGGCGATTCATCTGGTTTGGAATTCTCTACTCCTATTCCCTCGATGCTTAGCTTTTCATTCCTCAGCCCCTCTCCTGTTGTTGAACACAAGAGTTTTAAATTAGAGTGTTCAGCTAACATGTCAGATGTAAATGCAATTGCTGGAGAAACTAGCTTGGGAAAGTTACTTTTACTACAAGATTCTTATCTTTGCATTGAAAACGATGTTAAAGAAACGAATCGCAAGCCTGCAGAGGCTAAAAGGTCAAGTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACCTTGTGGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCTACATCTTTGAGATCATCTCTTGTTTGCTAG 1464 0.4317 MAVATSNSSNYEPCTSYNCYKVAGLTETILDTSQVYNLKDRYILGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVLFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIRGMLCTDPSRRLTAQEVLDHCWMESNQTNPEQLSENQIQSCEEWDVGGSSFSASFMSRNQDISFGAGTPTCDAQSPTFTCRSSFSSFLEEPVTPCLLSGGFSFKSVGDSSGLEFSTPIPSMLSFSFLSPSPVVEHKSFKLECSANMSDVNAIAGETSLGKLLLLQDSYLCIENDVKETNRKPAEAKRSSGMNGHKVLGIHSKRNRTIGLGECEQLDLVVTESVIRWSSCTQLPTSLRSSLVC* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1297 487 Gene3D Transferase(Phosphotransferase) domain 1 197 299 - -
Pvu4g1297 487 Gene3D Phosphorylase Kinase; domain 1 43 127 - -
Pvu4g1297 487 SUPERFAMILY Protein kinase-like (PK-like) 39 332 IPR011009 -
Pvu4g1297 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pvu4g1297 487 CDD STKc_CAMK 41 267 - -
Pvu4g1297 487 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 6 197 - -
Pvu4g1297 487 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 197 480 - -
Pvu4g1297 487 SMART serkin_6 42 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1297 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 197 480 - -
Pvu4g1297 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 197 - -
Pvu4g1297 487 Pfam Protein kinase domain 44 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1297 487 Pfam Protein kinase domain 197 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1297 487 Gene3D Transferase(Phosphotransferase) domain 1 128 196 - -
Pvu4g1297 487 ProSiteProfiles Protein kinase domain profile. 42 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g1297 487 ProSitePatterns Protein kinases ATP-binding region signature. 48 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1297 Pvu-Chr4 39392014 39395599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1297 29 275 EF-hand Containing Proteins AT3G57530 44.086 1.00e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu4g1297 Pkinase 6.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1297 - - gmx:100776088 847.81