Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1295 ATGGCTTCTGCAACACTCTCTCTGCATTACCCACTCCTTCTTCTCCGTTCTCCTCTTTCTACCAGAATTACCAAACCACCCCTCTCACCCCGACCCCTTCTTCTCCCTCACCCTCTCCACTCGCGATTCCTCCTCCCTCCGCCACGCGCCTACGTCGCCGCGCCCGCATCCGACCACAATTTTGGAGACCCGGATCCGAAGGTGGTCGGGTTGGGTTCAGAGAACGCGAAGCCGCAAAACGTGATCACGTGGAGCCTCCTCTGCACGCTTCTCATGAACCACAAACTGCGCCTGGCTCTCATGGTCGCAACGCTCTTCGCCTGCTCCACCTGTACACTATCCATGCCCCTCTTCTCCGGACGGTTTTTTGAAGTTCTAATTGGAGTTAGACCTGAACCGTTATGGAAGCTACTTACTAAAATTGGAGTTCTGTATGCCATGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATTGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGCGAGAATGTATCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATTCATACTTTTTTCTTTAGCACCGCAACTGGCACCCATTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTATCTACAAGAGATCTACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTAACTGAAACGTTTTCAGCTATTAGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCATTATATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTTCGTGGAAGTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGAGTTCAAGTTGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAGCAGTGGATGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACTGAGAATAGCCAAAAAAATTATTTTCACTATATGTCAGCTCTCAAAACATCAAGCAATTTATTTAGCTTAGCTTGGTCCGGAGATATTTGTCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACATGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTAGTGGGTCCAAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCTCGATTTTATGAGCCAATAAGTGGCTGTATAACAGTTGCAGGAGAGGATCTCCGAACATTTGACAAGAGTGAATGGGCCCAGGTTGTGTCTATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTGCACTTCCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATTGCCCGCGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAACGCTTGGTCCAGGATGCTCTCAACCAGTTGATGAAGGGAAGAACCACTTTAGTAATAGCCCACCGATTAAGCACAGTGCAAAATGCATATCAAATTGCAGTCTGTTCTGAGGGCAGGATTGCAGAATTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACCCAAAGGCTTGCCTTTGAATAA 2112 0.4304 MASATLSLHYPLLLLRSPLSTRITKPPLSPRPLLLPHPLHSRFLLPPPRAYVAAPASDHNFGDPDPKVVGLGSENAKPQNVITWSLLCTLLMNHKLRLALMVATLFACSTCTLSMPLFSGRFFEVLIGVRPEPLWKLLTKIGVLYAMEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLAPQLAPILGVLMLAVSISIAIYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSFAAVERINSVFSGVQVDDALAYGLERELRQKAVDDENYKLVLSNISTENSQKNYFHYMSALKTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILHGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPISGCITVAGEDLRTFDKSEWAQVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIIALPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1295 703 Pfam ABC transporter 477 628 IPR003439 GO:0005524
Pvu4g1295 703 CDD ABC_MTABC3_MDL1_MDL2 459 698 - -
Pvu4g1295 703 SMART AAA_5 486 680 IPR003593 -
Pvu4g1295 703 Gene3D ABC transporter type 1, transmembrane domain 71 395 IPR036640 GO:0005524|GO:0016021
Pvu4g1295 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 459 697 IPR003439 GO:0005524
Pvu4g1295 703 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 48 701 IPR039421 -
Pvu4g1295 703 CDD ABC_6TM_TAP_ABCB8_10_like 105 390 - -
Pvu4g1295 703 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 48 701 - -
Pvu4g1295 703 Pfam ABC transporter transmembrane region 100 369 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu4g1295 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 698 IPR027417 -
Pvu4g1295 703 ProSitePatterns ABC transporters family signature. 600 614 IPR017871 GO:0005524
Pvu4g1295 703 Gene3D - 457 700 IPR027417 -
Pvu4g1295 703 SUPERFAMILY ABC transporter transmembrane region 87 394 IPR036640 GO:0005524|GO:0016021
Pvu4g1295 703 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1295 Pvu-Chr4 39361170 39371845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1295 456 703 Calmodulin-binding Proteins AT2G36910 54.800 1.43e-75 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1295 K05657 - gmx:100791034 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1295 4 39361170 39371845 Pvu4g1295 4 39361170 39371845 ECH