Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1292 ATGTTTGGATTCTACCATGTTTCCTCTGAGCACTCAACTTCTTTGGATTCCTCATCGCCACCTTCGGAGACCTCTCGCCATGTGGCATTCTCCGACGAGGAGGTTCGGTTGGCAGTCAGGCATCCCAAGAAGAGGGCGGGCCGGAAGAAGTTCCGGGAGACGCGCCACCCTGTGTACCGCGGAGTGAGGAGGAGGAACTCAGACAAATGGGTTTGTGAGGTGAGGGAGCCAAACAAAAAGAGCAGGATTTGGCTAGGGACTTTTCCCACGCCGGAGATGGCGGCGCGGGCACACGATGTGGCGGCGATGGCTCTCAGGGGTCGGTATGCGTGTCTCAACTTTGCCGACTCGAGGTGGCGGCTACCAGCCCCTGCTAGTGCCAGCGCCAAAGATATACAAAAGGCGGCAGCAGAAGCTGCTGAAGCTTTCAGACCAGACCAAACTTTGGAAAACACTAACACAAGGCAAGAGTGCGTGGAGGCGGTGACGAAAACAACGATGGAACAAGGTGTGTTTTATATGGAGGAAGATCAAGAAGAGCAAGAGTTGGATATGCTTGAGTTGCTGAGGAACATGGTGTTCATGTCCCCATCACATTGCTTAGGGTATAAGTACGAAGATGCTGACCTGGGAGCTCAAGACACTGAGGTGTCACTATGGAGTTTCTCAATCTAA 675 0.5319 MFGFYHVSSEHSTSLDSSSPPSETSRHVAFSDEEVRLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPAPASASAKDIQKAAAEAAEAFRPDQTLENTNTRQECVEAVTKTTMEQGVFYMEEDQEEQELDMLELLRNMVFMSPSHCLGYKYEDADLGAQDTEVSLWSFSI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1292 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 224 IPR045277 GO:0003700
Pvu4g1292 224 MobiDBLite consensus disorder prediction 7 26 - -
Pvu4g1292 224 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Pvu4g1292 224 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Pvu4g1292 224 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Pvu4g1292 224 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 224 - -
Pvu4g1292 224 MobiDBLite consensus disorder prediction 1 28 - -
Pvu4g1292 224 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Pvu4g1292 224 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Pvu4g1292 224 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Pvu4g1292 224 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Pvu4g1292 224 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1292 Pvu-Chr4 39326716 39327951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1292 1 222 AP2-EREBP Transcription Factor Family AT5G51990 53.419 1.73e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g1292 AP2 8.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1292 - - gmx:547622 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1292 4 39326716 39327951 Pvu7g0680 7 5928454 5929059 ECH
Pvu4g1292 4 39326716 39327951 Pvu4g1292 4 39326716 39327951 ECH
Pvu4g1292 4 39326716 39327951 Pvu7g0680 7 5928454 5929059 PCT