Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1286 ATGCCCCCAATGACACCTTCGCGGGTGACAGGAGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAGTGTAGTTAACACTCACTTAAGCTCATCAATTGTTAACTCGTCTAGCACAGTTACGGGAGCCCGTCGAACAAACCTGGGTCCAGTTTCTGGGGATATGAATAATGCAGTTTTGAACAGTGTTGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCCCTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCCAGTGTTAACACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACATCAAATAATATTAGTATTTCTGGCTCATCAGTGATTGATGGTTCCTCTGTAGTGCAACAGAGCACTCATCAAGATCAGAATCCTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAGTGCTACATCGTTGCCTGCATCTCAAACTGGCCCCTCTTCCCTCCATATGGGTGCACATGTCCCTGGGTCTTTCATTCATGATCCAAATAATGCATCTCAGCTGTCAAAGAAACCTAGACTGGATATCAAACAGGAAGATTTAATGCAGCAGCATCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCACAGTTACAGGCTTTACTTCAACAACAGCAGAGACTGAGACAACAGCAAATCTTTCAGTCAATGCCCCAATTACAGAGAGTGCACTTGCAGCAACAACAGCAACAGCAACAGCAGCAGCAGCACCAACAACAAATGCAATTGAGGCAGCAATTACAGCAACAAGTGATGCAGCCCTCTTCTGCTGTCAAGCGCCCATGTGACAATGGTGTCAGTGGGGTTTGTGCTCGTCGACTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATATTATTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGTGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTGATGAAATCAAATTTGGTGGTGGTGTGATTGATGAACTTTTATTTCTGGACTTGCCACGTGAAATAAGATTTTCTTCTGGTGCGATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTTCGTGAAGGTCAACTACGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAACTTCTCCCTCGAAGGTTGGTTGCACCACCGGTCAACCAATTAGTACAGGTAGCTCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGAGCAGATGGGGTTTCTCAGCAAGATTTGCAAGCAAACAGCAACATGGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTCTGCAGATTTCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGCAGAGCACAGAGTTGGGGCAATAGAGTGTTTGAAAAATTATCCTCTACTAACAACAGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGATGGCAAATGTTCATGGTCTGCCAACTGATAGAAATACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCAGATAAACAACAGTCAAAATGTGGTTAGTCGTGGTGCTTTGAGTGGGTCATCCCATTTAGCACTTACCAACTACCAAAGTCTTCTCGTGAGACAAAATTCAATGAATTCTAGCCCTGGCTCCCTTCAGCGAGAAGGATCCTCATTCAATAATTCTAGCCCGAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTTCTTTGATTCCAGGCTCAATGCAAAACTCTTCTGTAGGTGGTTTCCCAGGTTCCCATCTAACCTCGCAGCAGTCACCACAACTCCTCCAACAACGCACATTAAGTGCAAATGGTTTACTGCAACAAAATCATTCACAGGGGTCCCAAGGAAATCAAGCTCTACAGCAGCAGCAGCAGATGATCCACCAACTAGTGAAGGAAATGTCAAATAACAATGGGGGAATGCAATCACAGCCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAGAATGCAATGGGTTTTGGTGGCCATACTCCATCCTTAAGCGGAGGTTCTGCCAATCTTCCACGAAACAATGGACCCATGTCGAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCCGCTGCTGGCAACAGTGGATTCAACCCAAGAACATCTGATATGCCGCAAAGTCTACATTTGCAAGATGTGGTTCAGGATATTGGCCATGATTTCGCGGATAACCCCTTTTTTAACAGTGATCTTGATGATGACATGGGTTTTGGCTGGAAGGCATGA 2604 0.4443 MPPMTPSRVTGGLTQSSSHSGIFFQGDGQSQSVVNTHLSSSIVNSSSTVTGARRTNLGPVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSTHQDQNPQQLQQNQQQLQGASSATSLPASQTGPSSLHMGAHVPGSFIHDPNNASQLSKKPRLDIKQEDLMQQHQVIQQILQRQDSMQLQGRNPQLQALLQQQQRLRQQQIFQSMPQLQRVHLQQQQQQQQQQQHQQQMQLRQQLQQQVMQPSSAVKRPCDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLDEIKFGGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPPVNQLVQVAQKCQSTIAESGADGVSQQDLQANSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICAEHRVGAIECLKNYPLLTTASKLQMQKMQEMEQMANVHGLPTDRNTLNKLMAMNPGLNNQINNSQNVVSRGALSGSSHLALTNYQSLLVRQNSMNSSPGSLQREGSSFNNSSPSPSSALQGAGPSLIPGSMQNSSVGGFPGSHLTSQQSPQLLQQRTLSANGLLQQNHSQGSQGNQALQQQQQMIHQLVKEMSNNNGGMQSQPLGGPNANGNMAKNAMGFGGHTPSLSGGSANLPRNNGPMSRNNSFKTASNSDSSAAAGNSGFNPRTSDMPQSLHLQDVVQDIGHDFADNPFFNSDLDDDMGFGWKA* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1286 867 Coils Coil 268 288 - -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 135 197 - -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 752 768 - -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 752 832 - -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g1286 867 PANTHER LIM DOMAIN-BINDING PROTEIN 8 154 IPR029005 -
Pvu4g1286 867 PANTHER LIM DOMAIN-BINDING PROTEIN 170 866 IPR029005 -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 8 25 - -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 785 832 - -
Pvu4g1286 867 Pfam LIM-domain binding protein 311 571 IPR029005 -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 652 710 - -
Pvu4g1286 867 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 8 154 - -
Pvu4g1286 867 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 170 866 - -
Pvu4g1286 867 MobiDBLite consensus disorder prediction 135 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1286 Pvu-Chr4 39114282 39120280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1286 306 580 C2H2 Transcription Factor Family AT1G43850 60.000 8.41e-107 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1286 - - pvu:PHAVU_004G121400g 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1286 4 39114282 39120280 Pvu4g1286 4 39114282 39120280 ECH